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Contaminated dicloxacillin capsules as the source of an NDM-5/OXA-48-producing Enterobacter hormaechei ST79 outbreak, Denmark and Iceland, 2022 and 2023

• Authors : Agergaard, Charlotte Nielsen; Porsbo, Lone Jannok; Sydenham, Thomas Vognbjerg

Subjects: antibiotic; CPO; dicloxacillin

• Source: Agergaard , C N , Porsbo , L J , Sydenham , T V , Hansen , S G K , Steinke , K , Larsen , S L , Helgason , K O , Hansen , F , Karstensen , K T , Henius , A E ,

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First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023

• Authors : Rasmussen, Morten; Møller, Frederik Trier; Gunalan, Vithiagaran

Subjects: COVID-19; diagnostic preparedness; emerging variant

• Source: Rasmussen , M , Møller , F T , Gunalan , V , Baig , S , Bennedbæk , M , Christiansen , L E , Cohen , A S , Ellegaard , K , Fomsgaard , A , Franck , K T , Larsen , N B , Larsen , T G , Lassaunière ,

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Molecular epidemiology of the SARS-CoV-2 variant Omicron BA.2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022

• Authors : Fonager, Jannik; Bennedbæk, Marc; Bager, Peter

Subjects: BA.1; BA.2; COVID-19

• Source: Fonager , J , Bennedbæk , M , Bager , P , Wohlfahrt , J , Ellegaard , K M , Ingham , A C , Edslev , S M , Stegger , M , Sieber , R N , Lassauniere , R , Fomsgaard , A , Lillebaek , T , Svarrer , C W

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Rectally shed SARS-CoV-2 in COVID-19 inpatients is consistently lower than respiratory shedding and lacks infectivity

• Authors : Pedersen, Rune Micha; Tornby, Ditte Sandfeld; Bang, Line Lundegård

Subjects: Coronavirus disease 2019; Faeces; Gastrointestinal infection

• Source: Pedersen , R M , Tornby , D S , Bang , L L , Madsen , L W , Skov , M N , Sydenham , T V , Steinke , K , Jensen , T G , Johansen , I S & Andersen , T E 2022 , ' Rectally

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Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

• Authors : Michaelsen, Thomas Yssing; Bennedbæk, Marc; Christiansen, Lasse E

Subjects: COVID-19/epidemiology; Denmark/epidemiology; Humans

• Source: Michaelsen , T Y , Bennedbæk , M , Christiansen , L E , Jørgensen , M S F , Møller , C H , Sørensen , E A , Knutsson , S , Brandt , N J , Jensen , T B N , Chiche-Lapierre , C , Collados , E F ,

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Increased transmissibility of SARS-CoV-2 lineage B.1.1.7 by age and viral load

• Authors : Lyngse, Frederik Plesner; Mølbak, Kåre; Skov, Robert Leo

Subjects: Adolescent; Adult; Age Factors

• Source: Lyngse , F P , Mølbak , K , Skov , R L , Christiansen , L E , Mortensen , L H , Albertsen , M , Møller , C H , Krause , T G , Rasmussen , M , Michaelsen , T Y , Voldstedlund , M , Fonager , J ,

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Rectally shed SARS-CoV-2 in COVID-19 inpatients is consistently lower than respiratory shedding and lacks infectivity

• Authors : Pedersen, Rune Micha; Tornby, Ditte Sandfeld; Bang, Line Lundegård

Subjects: Research Note

• Source: Clin Microbiol Infect

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Example input and output for RSYD-BASIC pipeline

• Authors : Steinke, Kat; Thomsen, Karina Gravgaard; Hoegh, Silje Vermedal

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Bacteroides fragilis division II ( cfiA metallo-beta-lactamase positive) prevalence and resistance to meropenem in Danish clinical and faecal isolates

• Authors : Sydenham, Thomas Vognbjerg; Ferløv-Schwensen, Simon Andreas; Møller Hansen, Kia Cirkeline

• Source: Sydenham , T V , Ferløv-Schwensen , S A , Møller Hansen , K C , Østergaard , C & Justesen , U S 2017 , ' Bacteroides fragilis division II ( cfiA

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Meropenem gradient strips +/- EDTA and not imipenem should be used first line to detect metallo-beta-lactamases in Bacteroides fragilis

• Authors : Acar, Ziyap; Sydenham, Thomas Vognbjerg; Johansson, Åsa

• Source: Acar , Z , Sydenham , T V , Johansson , Å & Justesen , U S 2016 , ' Meropenem gradient strips +/- EDTA and not imipenem should be used first line to detect

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