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Academic Journal

Clinical application of nanopore sequencing for haplotype linkage analysis in preimplantation genetic testing for Duchenne muscular dystrophy.

  • Authors : Xia Q; Reproductive Medicine Center, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China.; Clinical Research Center for Women's Reproductive Health in Hunan Province, Changsha, 410008, Hunan, China.

Subjects: Muscular Dystrophy, Duchenne*/Muscular Dystrophy, Duchenne*/Muscular Dystrophy, Duchenne*/genetics ; Muscular Dystrophy, Duchenne*/Muscular Dystrophy, Duchenne*/Muscular Dystrophy, Duchenne*/diagnosis ; Haplotypes*

  • Source: Scientific reports [Sci Rep] 2025 Aug 20; Vol. 15 (1), pp. 30498. Date of Electronic Publication: 2025 Aug 20.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Enhancing CYP2D6 genotyping with nanopore sequencing to address allele diversity P. vivax malaria elimination.

  • Authors : Wongsurawat T; Siriraj Long-Read Lab, Oxford Nanopore Centre of Excellence, Division of Medical Bioinformatics, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand. .; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, 72205, USA. .

Subjects: Cytochrome P-450 CYP2D6*/Cytochrome P-450 CYP2D6*/Cytochrome P-450 CYP2D6*/genetics ; Malaria, Vivax*/Malaria, Vivax*/Malaria, Vivax*/genetics ; Malaria, Vivax*/Malaria, Vivax*/Malaria, Vivax*/drug therapy

  • Source: Scientific reports [Sci Rep] 2025 Sep 30; Vol. 15 (1), pp. 33842. Date of Electronic Publication: 2025 Sep 30.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Comparative analysis of illumina and oxford nanopore sequencing platforms for 16S rRNA profiling of respiratory microbial communities.

Subjects: RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/genetics ; Microbiota*/Microbiota*/Microbiota*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: Scientific reports [Sci Rep] 2025 Sep 29; Vol. 15 (1), pp. 33688. Date of Electronic Publication: 2025 Sep 29.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Rapid and reliable species-level identification from clinical samples using 16 S rRNA gene nanopore sequencing analysis.

  • Authors : Ivens MJR; Center of Infectious Diseases, Medical Microbiology and Infection Control, Leiden University Medical Centre, Albinusdreef 2, Leiden, 2333 ZA, The Netherlands.; Kamminga S

Subjects: RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/genetics ; Nanopore Sequencing*/Nanopore Sequencing*/Nanopore Sequencing*/methods ; Bacteria*/Bacteria*/Bacteria*/genetics

  • Source: Scientific reports [Sci Rep] 2025 Aug 05; Vol. 15 (1), pp. 28606. Date of Electronic Publication: 2025 Aug 05.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Nanopore sequencing reveals the genomic diversity of the variants of concern of SARS-CoV-2 during 2021 disease outbreak in Pakistan.

  • Authors : Hassan ZU; Microbiological Analysis Team, Korea Research Institute of Standards and Science (KRISS), Daejeon, 34113, Republic of Korea. .; Department of Bio-Analytical Science, University of Science and Technology (UST), Daejeon, 34113, Republic of Korea. .

Subjects: SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/genetics ; SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/isolation & purification ; COVID-19*/COVID-19*/COVID-19*/epidemiology SARS-CoV-2 variants

  • Source: Scientific reports [Sci Rep] 2025 Aug 01; Vol. 15 (1), pp. 28129. Date of Electronic Publication: 2025 Aug 01.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Bacterial community profile of three Ethiopian hot springs based on 16S rRNA gene nanopore sequencing.

  • Authors : Guta M; Department of Biology, Jimma University, Jimma, Ethiopia. .; Department of Diagnostic Sciences, Ghent University, Ghent, Belgium. .

Subjects: RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/genetics ; Hot Springs*/Hot Springs*/Hot Springs*/microbiology ; Bacteria*/Bacteria*/Bacteria*/genetics

  • Source: Scientific reports [Sci Rep] 2025 Jul 02; Vol. 15 (1), pp. 23491. Date of Electronic Publication: 2025 Jul 02.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Advanced analysis of retrotransposon variation in the human genome with nanopore sequencing using RetroInspector.

Subjects: Nanopore Sequencing*/Nanopore Sequencing*/Nanopore Sequencing*/methods ; Retroelements*/Retroelements*/Retroelements*/genetics ; Genome, Human*

  • Source: Scientific reports [Sci Rep] 2025 Apr 25; Vol. 15 (1), pp. 14489. Date of Electronic Publication: 2025 Apr 25.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Diagnostic accuracy of nanopore sequencing for detecting Mycobacterium tuberculosis and drug-resistant strains: a systematic review and meta-analysis.

  • Authors : Carandang THDC; Pamantasan ng Lungsod ng Maynila College of Medicine, Manila, 1002, Philippines.; Cunanan DJ

Subjects: Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/genetics ; Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/isolation & purification ; Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/drug effects

  • Source: Scientific reports [Sci Rep] 2025 Apr 04; Vol. 15 (1), pp. 11626. Date of Electronic Publication: 2025 Apr 04.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Identification of a cryptic unbalanced translocation Der(22)t(12;22)(q24.33;q13.33) in a large Chinese family with Phelan-McDermid syndrome by nanopore sequencing.

  • Authors : Wu X; Reproductive Medicine Center, Jiangxi Maternal and Child Health Hospital, 318 Bayi Avenue, Nanchang, 330006, China.; Jiangxi Key Laboratory of Reproductive Health, Jiangxi Maternal and Child Health Hospital, Nanchang, China.

Subjects: Chromosome Disorders*/Chromosome Disorders*/Chromosome Disorders*/genetics ; Chromosome Disorders*/Chromosome Disorders*/Chromosome Disorders*/diagnosis ; Chromosomes, Human, Pair 22*/Chromosomes, Human, Pair 22*/Chromosomes, Human, Pair 22*/genetics Telomeric 22q13 Monosomy Syndrome

  • Source: Scientific reports [Sci Rep] 2025 Jan 21; Vol. 15 (1), pp. 2656. Date of Electronic Publication: 2025 Jan 21.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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Academic Journal

Temporal transcriptional profiling of host cells infected by a veterinary alphaherpesvirus using nanopore sequencing.

  • Authors : Tombácz D; Department of Medical Biology, Albert Szent-Györgyi Medical School, University of Szeged, Somogyi u. 4, Szeged, 6720, Hungary.; MTA-SZTE Lendület GeMiNI Research Group, University of Szeged, Somogyi u. 4, Szeged, 6720, Hungary.

Subjects: Gene Expression Profiling* ; Nanopore Sequencing*/Nanopore Sequencing*/Nanopore Sequencing*/methods ; Transcriptome*

  • Source: Scientific reports [Sci Rep] 2025 Jan 25; Vol. 15 (1), pp. 3247. Date of Electronic Publication: 2025 Jan 25.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited

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