Source: PAG XXX. Plant and Animal Genome ; https://hal.inrae.fr/hal-03937923 ; PAG XXX. Plant and Animal Genome, Jan 2023, San Diego (California), United States. , ⟨10.15454/4NYHD6⟩ ;

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Book

Genotyping, the Usefulness of Imputation to Increase SNP Density, and Imputation Methods and Tools

Authors : Phocas, Florence;

Subjects: imputation accuracy imputation error rate phasing haplotype low density high density SNP array genotyping-by-sequencing sequence; imputation accuracy; imputation error rate

Source: Genomic Prediction of Complex Traits ; https://hal.inrae.fr/hal-03944422 ; Genomic Prediction of Complex Traits, 2467, Springer US, pp.113-138, 2022, Methods in Molecular Biology,

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Report

Workflow for SNP genotyping using the Hi-Plex method v2

Authors : Besnard, Anne-Laure; Park, Daniel J.; J., Bernard ...

Subjects: SNP genotyping; SNP panel; genotyping by sequencing

Source: https://hal.inrae.fr/hal-04189250 ; 2023.

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Academic Journal

Inheritance and Quantitative Trait Loci Mapping of Aromatic Compounds from Clementine (Citrus × clementina Hort. ex Tan.) and Sweet Orange (C. × sinensis (L.) Osb.) Fruit Essential Oils

Authors : Ferrer, Vincent; Costantino, Gilles; Paymal, Noémie ...

Subjects: blood sweet orange; essential oil yield; genotyping by sequencing

Source: ISSN: 2073-4425 ; Genes ; https://hal.inrae.fr/hal-04489367 ; Genes, 2023, 14, pp.1800. ⟨10.3390/genes14091800⟩.

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Academic Journal

VNtyper enables accurate alignment-free genotyping of MUC1 coding VNTR using short-read sequencing data in autosomal dominant tubulointerstitial kidney disease

Authors : Saei, Hassan; Morinière, Vincent; Heidet, Laurence ...

Subjects: Genetics; Genomics; Techniques in genetics

Source: EISSN: 2589-0042 ; iScience ; https://hal.sorbonne-universite.fr/hal-04268667 ; iScience, 2023, 26 (7), pp.107171. ⟨10.1016/j.isci.2023.107171⟩

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Academic Journal

Genetic Structure and TALome Analysis Highlight a High Level of Diversity in Burkinabe Xanthomonas Oryzae pv. oryzae Populations

Authors : Diallo, Amadou; Wonni, I.; Sicard, A. ...

Subjects: Rice; Bacterial leaf blight; Xoo

Source: ISSN: 1939-8425.

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Academic Journal

RNAseq based variant dataset in a black poplar association panel

Authors : Rogier, Odile; Chateigner, Aurélien; Lesage-Descauses, Marie-Claude ...

Subjects: Populus nigra; RNA polymorphisms; SNV discovery

Source: ISSN: 1756-0500 ; BMC Research Notes ; https://hal.inrae.fr/hal-04225417 ; BMC Research Notes, 2023, 16, pp.248. ⟨10.1186/s13104-023-06521-w⟩.

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Academic Journal

Genetic structure and first genome‐wide insights into the adaptation of a wild relative of grapevine, Vitis berlandieri

Authors : Blois, Louis; de Miguel, Marina; Bert, Pierre-François ...

Subjects: genome-wide association; genotyping by sequencing; grapevinelong reads

Source: ISSN: 1752-4563.

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Academic Journal

Extra‐pair paternity, breeding density, and synchrony in natural cavities versus nestboxes in two passerine birds

Authors : Di Lecce, Irene; Perrier, Charles; Szulkin, Marta ...

Subjects: cavity-nesting birds; extra-pair paternity; genotyping by sequencing method

Source: EISSN: 2045-7758 ; Ecology and Evolution ; https://hal.inrae.fr/hal-04144537 ; Ecology and Evolution, 2023, 13, pp.e10163. ⟨10.1002/ece3.10163⟩ ;

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Academic Journal

Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens

Authors : Herry, Florian; Herault, Frédéric; Lecerf, Frédéric ...

Subjects: Genomic selection; Layer chicken; Low-density panel

Source: ISSN: 1471-2164 ; BMC Genomics ; https://hal.inrae.fr/hal-04131807 ; BMC Genomics, 2023, 24 (1), pp.271. ⟨10.1186/s12864-023-09321-5⟩.

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Academic Journal

Brucella abortus in Kazakhstan, population structure and comparison with worldwide genetic diversity

Authors : Shevtsov, Alexandr; Cloeckaert, Axel; Berdimuratova, Kalysh ...

Subjects: Brucella abortus; SNP; WGS

Source: ISSN: 1664-302X.

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Academic Journal

Whole‐genome sequencing of SARS‐CoV‐2: Comparison of target capture and amplicon single molecule real‐time sequencing protocols

Authors : Nicot, Florence; Trémeaux, Pauline; Latour, Justine ...

Subjects: long read sequencing; SARS-CoV-2 genotyping; SMRT sequencing

Source: ISSN: 0146-6615.

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Academic Journal

Monospecific renaming within the cyanobacterial genus Limnospira (Spirulina) and consequences for food authorization

Authors : Roussel, Théotime; Halary, Sébastien; Duval, Charlotte ...

Subjects: spirulina; foods; genomics

Source: ISSN: 1364-5072.

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Academic Journal

Core genome sequencing and genotyping of Leptospira interrogans in clinical samples by target capture sequencing

Authors : Grillova, Linda; Cokelaer, Thomas; Mariet, Jean-François ...

Subjects: Genomics; Genotyping; Leptospira

Source: ISSN: 1471-2334.

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Academic Journal

Development and Evaluation of an AxiomTM 60K SNP Array for Almond (Prunus dulcis)

Authors : Duval, Henri; Coindre, Eva; Ramos-Onsins, Sebastian, E ...

Subjects: Prunus persica; SNP; Axiom array

Source: ISSN: 2223-7747 ; Plants ; https://hal.science/hal-03935771 ; Plants, 2023, 12 (2), pp.242. ⟨10.3390/plants12020242⟩.

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Academic Journal

Pangenomic analysis of Coxiella burnetii unveils new traits in genome architecture

Authors : Abou Abdallah, Rita; Million, Matthieu; Delerce, Jeremy ...

Subjects: Coxiella burnetii; Q fever; genotyping

Source: ISSN: 1664-302X.

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Conference

Presence/Absence variation contributes to adaptation, agronomic traits variation and hybrid performances in maize

Authors : Mabire, Clément; Guilbaud, Romane; Duarte, Jorge ...

Subjects: Structural Variation; GWAS; Genomic predictionSerbiaBelgrade, Serbia

Source: XXVth EUCARPIA Maize and Sorghum Conference – Current challenges and new methods for Maize and Sorghum Breeding ; https://hal.inrae.fr/hal-04225603 ; XXVth EUCARPIA Maize and Sorghum Conference –

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Report

The AdaptSgenoLasso, an extended version of the SgenoLasso, for gene mapping and for genomic prediction using the extremes

Authors : Rabier, Charles-Elie; Delmas, Céline;

Subjects: Gaussian process; Selective Genotyping; Genomic Selection

Source: https://hal.science/hal-04059080 ; 2023.

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Academic Journal

Genome‐wide analysis of hybridization in wild boar populations reveals adaptive introgression from domestic pig

Authors : Mary, Nicolas; Iannuccelli, Nathalie; Petit, Geoffrey ...

Subjects: admixture; feral pig; genetic monitoring

Source: ISSN: 1752-4563.

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Academic Journal

Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations

Authors : Seyum, Essubalew Getachew; Bille, Ngalle Hermine; Abtew, Wosene Gebreselassie ...

Subjects: Oil palm; Single nucleotide polymorphisms; Genome properties

Source: ISSN: 1234-1983 ; Journal of Applied Genetics ; https://hal.inrae.fr/hal-03703155 ; Journal of Applied Genetics, 2022, ⟨10.1007/s13353-022-00708-w⟩.

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Academic Journal

Genotyping data of French wild boar populations using porcine genome-wide genotyping array

Authors : Iannuccelli, Nathalie; Mary, Nicolas; Bonnet, Nathalie ...

Subjects: Wild boar; Genome-wide DNA genotyping; SNP

Source: ISSN: 1756-0500 ; BMC Research Notes ; https://hal.inrae.fr/hal-03689331 ; BMC Research Notes, 2022, 15 (1), pp.170. ⟨10.1186/s13104-022-06052-w⟩.

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Academic Journal

The evolutionary relationship between bere barley and other types of cultivated barley

Authors : Drosou, Konstantina; Craig, Hayley; Palmer, Karren ...

Subjects: Agriculture; Barley; Bere

Source: ISSN: 0925-9864.

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