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Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites.

• Authors : Totrov, Maxim¹

• Source: BMC Bioinformatics. 2011 Supplement 1, Vol. 12 Issue Suppl 1, p1-9. 9p. 6 Diagrams, 2 Graphs.

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MultiSETTER: web server for multiple RNA structure comparison.

• Authors : Čech, Petr¹; Hoksza, David^1,2 ; Svozil, Daniel¹

• Source: BMC Bioinformatics. Aug2015, Vol. 16 Issue 1, p1-8. 8p. 4 Color Photographs, 1 Diagram, 1 Chart.

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An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data.

• Authors : Jianbo Lu; Guoliang Xu; Shihua Zhang

Subjects: ATOMS; PROTEIN structure; DATA reductionMATLAB (Computer software)

• Source: Algorithms for Molecular Biology; 6/21/2016, Vol. 11, p1-10, 10p

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Coherently driven degenerate three-level laser with parametric amplifier.

• Authors : Darge, Tewodros Y.; Kassahun, Fesseha

Subjects: LIGHT; COHERENCE (Optics); PARAMETRIC amplifiers

• Source: PMC Physics B; 2010, Vol. 3, p1-18, 18p, 1 Diagram, 1 Chart, 7 Graphs

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Using least median of squares for structural superposition of flexible proteins.

• Authors : Yu-Shen Liu; Yi Fang; Ramani, Karthik

Subjects: ALGORITHMS; LEAST squares; MEDIAN (Mathematics)

• Source: BMC Bioinformatics; 2009, Vol. 10, p1-23, 23p

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Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteins.

• Authors : Madej, Thomas; Panchenko, Anna R.; Chen, Jie

Subjects: RESEARCH; COMPARATIVE studies; PROTEINS

• Source: BMC Structural Biology; 2007, Vol. 7, p23-9, 9p, 2 Charts, 2 Graphs

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Using molecular principal axes for structural comparison:determining the tertiary changes of a FAB antibody domaininduced by antigenic binding.

• Authors : Silverman, B. David

Subjects: MOLECULES; X-rays; PROTEIN analysis

• Source: BMC Structural Biology; 2007, Vol. 7, p77-88, 12p

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