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A saturated reaction in repressor synthesis creates a daytime dead zone in circadian clocks

• Authors : Koichiro Uriu; Hajime Tei

Subjects: Feedback, Physiological; 0303 health sciences; Light

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 15, Iss 2, p e1006787 (2019)

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Symmetric allosteric mechanism of hexameric Escherichia coli arginine repressor exploits competition between L-arginine ligands and resident arginine residues.

• Authors : Strawn R; Chemistry Department, Princeton University, Princeton, New Jersey, USA.; Melichercik M

Subjects: Molecular Dynamics Simulation*; Arginine/Arginine/Arginine/*metabolism ; Escherichia coli Proteins/Escherichia coli Proteins/Escherichia coli Proteins/*metabolism

• Source: PLoS computational biology [PLoS Comput Biol] 2010 Jun 03; Vol. 6 (6), pp. e1000801. Date of Electronic Publication: 2010 Jun 03.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Electronic Cited Medium: Internet

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Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study

• Authors : Soma Ghosh; Saraswathi Vishveshwara; Nagasuma Chandra

Subjects: 0303 health sciences; Binding Sites; QH301-705.5

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 11, Iss 12, p e1004500 (2015)

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Dynamic Allostery in the Methionine Repressor Revealed by Force Distribution Analysis

• Authors : Frauke Gräter; Fei Xia; Wolfram Stacklies

Subjects: Models, Molecular; 0301 basic medicine; QH301-705.5

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 5, Iss 11, p e1000574 (2009)

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Evolutionary Potential of a Duplicated Repressor-Operator Pair: Simulating Pathways using Mutation Data

• Authors : Frank J. Poelwijk; Daniel J. Kiviet; Sander J. Tans

Subjects: 0301 basic medicine; 0303 health sciences; Operator Regions, Genetic

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 2, Iss 5, p e58 (2006)

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Repressor Dimerization in the Zebrafish Somitogenesis Clock

• Authors : Olivier Cinquin

Subjects: 0301 basic medicine; QH301-705.5; Gene Expression

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 3, Iss 2, p e32 (2007)

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Evolutionary Potential of a Duplicated Repressor-Operator Pair: Simulating Pathways Using Mutation Data.

• Authors : Poelwijk, Frank J.¹; Kiviet, Daniel J.¹; Tans, Sander J.¹

• Source: PLoS Computational Biology. May2006, Vol. 2 Issue 5, pe58-0475. 9p. 2 Diagrams, 2 Graphs.

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Modeling the START transition in the budding yeast cell cycle.

• Authors : Ravi J; Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America.; Samart K

Subjects: Cell Cycle*/Cell Cycle*/Cell Cycle*/physiology ; Saccharomyces cerevisiae*/Saccharomyces cerevisiae*/Saccharomyces cerevisiae*/genetics ; Saccharomyces cerevisiae*/Saccharomyces cerevisiae*/Saccharomyces cerevisiae*/metabolism

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 02; Vol. 20 (8), pp. e1012048. Date of Electronic Publication: 2024 Aug 02 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Exploring of the feature space of de novo developed post-transcriptional riboregulators.

• Authors : Peters G; Centre for Synthetic Biology, Ghent University, Ghent, Belgium.; Maertens J

Subjects: Metabolic Engineering/Metabolic Engineering/Metabolic Engineering/*methods ; Protein Engineering/Protein Engineering/Protein Engineering/*methods ; Repressor Proteins/Repressor Proteins/Repressor Proteins/*metabolism

• Source: PLoS computational biology [PLoS Comput Biol] 2018 Aug 17; Vol. 14 (8), pp. e1006170. Date of Electronic Publication: 2018 Aug 17 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling.

• Authors : Tark-Dame M; Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.; Jerabek H

Subjects: Models, Molecular*; Chromatin/Chromatin/Chromatin/*chemistry ; Chromatin/Chromatin/Chromatin/*metabolism

• Source: PLoS computational biology [PLoS Comput Biol] 2014 Oct 09; Vol. 10 (10), pp. e1003877. Date of Electronic Publication: 2014 Oct 09 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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