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Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations.

• Authors : Zhang, Ren-Gang^1,2 (AUTHOR); Shang, Hong-Yun¹ (AUTHOR); Jia, Kai-Hua³ (AUTHOR)

• Source: Briefings in Bioinformatics. Jan2024, Vol. 25 Issue 1, p1-13. 13p.

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Enhancing cryo-EM structure prediction with DeepTracer and AlphaFold2 integration.

• Authors : Chen J; Division of Computing and Software Systems, University of Washington Bothell, Bothell, WA 98011, USA.; Zia A

Subjects: Biological Evolution* ; Machine Learning*; Cryoelectron Microscopy

• Source: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Genome-wide functional association networks: background, data & state-of-the-art resources.

• Authors : Guala, Dimitri¹ (AUTHOR) ; Ogris, Christoph² (AUTHOR); Müller, Nikola² (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2020, Vol. 21 Issue 4, p1224-1237. 14p.

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CAFU: a Galaxy framework for exploring unmapped RNA-Seq data.

• Authors : Chen, Siyuan¹ (AUTHOR); Ren, Chengzhi¹ (AUTHOR); Zhai, Jingjing¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Mar2020, Vol. 21 Issue 2, p676-686. 11p.

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Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2.

• Authors : Cheng L; NHC and CAMS Key Laboratory of Molecular Probe and Targeted Theranostics, Harbin Medical University, Harbin, Heilongjiang 150028, China.; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang 150081, China.

Subjects: Biological Evolution* ; Mutation*; SARS-CoV-2/SARS-CoV-2/SARS-CoV-2/*genetics

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1442-1450.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Compositional diversity and evolutionary pattern of coronavirus accessory proteins.

• Authors : Shang J; Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China.; Han N

Subjects: Biological Evolution*; COVID-19/COVID-19/COVID-19/*virology ; SARS-CoV-2/SARS-CoV-2/SARS-CoV-2/*metabolism

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1267-1278.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Evolutionary and codon usage preference insights into spike glycoprotein of SARS-CoV-2.

• Authors : Malik YS; College of Animal Biotechnology, GADVASU, Ludhiana.; Ansari MI

Subjects: Biological Evolution* ; Codon Usage*; SARS-CoV-2/SARS-CoV-2/SARS-CoV-2/*genetics

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1006-1022.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Roles of host small RNAs in the evolution and host tropism of coronaviruses.

• Authors : Meng Q; Southern University of Science and Technology School of Medicine, China.; Chu Y

Subjects: Biological Evolution* ; Host-Pathogen Interactions* ; Viral Tropism*

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1096-1105.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications.

• Authors : Liang Z; School of Biology and Basic Medical Sciences, Soochow University, Suzhou, China.; Verkhivker GM

Subjects: Biological Evolution*; High-Throughput Screening Assays/High-Throughput Screening Assays/High-Throughput Screening Assays/*methods; Computational Biology/Computational Biology/Computational Biology/methods

• Source: Briefings in bioinformatics [Brief Bioinform] 2020 May 21; Vol. 21 (3), pp. 815-835.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly.

• Authors : Sun, Lidan¹; Wang, Jing²; Zhu, Xuli²

• Source: Briefings in Bioinformatics. Jul2018, Vol. 19 Issue 4, p603-612. 10p.

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