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TIANA: transcription factors cooperativity inference analysis with neural attention.

• Authors : Li, Rick; Han, Claudia; Glass, Christopher

Subjects: Bioinformatics; Deep Learning; Integrated gradients

• Source: BMC Bioinformatics. 25(1)

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Atlas of regulated target genes of transcription factors (ART-TF) in human ES cells.

• Authors : Sharov, Alexei A.¹ (AUTHOR) ; Nakatake, Yuhki² (AUTHOR); Wang, Weidong¹ (AUTHOR)

• Source: BMC Bioinformatics. 9/16/2022, Vol. 23 Issue 1, p1-19. 19p.

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DeepCAC: a deep learning approach on DNA transcription factors classification based on multi-head self-attention and concatenate convolutional neural network.

• Authors : Zhang J; Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China.; Liu B

Subjects: Transcription Factors* ; Deep Learning*; DNA

• Source: BMC bioinformatics [BMC Bioinformatics] 2023 Sep 18; Vol. 24 (1), pp. 345. Date of Electronic Publication: 2023 Sep Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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SNPeBoT: a tool for predicting transcription factor allele specific binding.

• Authors : Gohl, Patrick¹ (AUTHOR); Oliva, Baldo¹ (AUTHOR)

• Source: BMC Bioinformatics. 3/10/2025, Vol. 26 Issue 1, p1-13. 13p.

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Detecting clusters of transcription factors based on a nonhomogeneous poisson process model.

• Authors : Wu X; Department of Statistics, Virginia Tech, 250 Drillfield Drive, Blacksburg, VA, 24061, USA. .; Liu S

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Genome*

• Source: BMC bioinformatics [BMC Bioinformatics] 2022 Dec 09; Vol. 23 (1), pp. 535. Date of Electronic Publication: 2022 Dec Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Machine learning predicts nucleosome binding modes of transcription factors.

• Authors : Kishan, K. C.¹ (AUTHOR); Subramanya, Sridevi K.² (AUTHOR); Li, Rui¹ (AUTHOR)

• Source: BMC Bioinformatics. 3/30/2021, Vol. 22 Issue 1, p1-19. 19p.

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Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast.

• Authors : Yang, Tzu-Hsien¹ (AUTHOR)

• Source: BMC Bioinformatics. 12/27/2019, Vol. 20 Issue 1, p1-16. 16p. 1 Diagram, 1 Chart, 7 Graphs.

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The evaluation of transcription factor binding site prediction tools in human and Arabidopsis genomes.

• Authors : Wanniarachchi DV; Department of Plant Sciences, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka.; Viswakula S

Subjects: Arabidopsis*/Arabidopsis*/Arabidopsis*/genetics ; Arabidopsis*/Arabidopsis*/Arabidopsis*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Dec 02; Vol. 25 (1), pp. 371. Date of Electronic Publication: 2024 Dec Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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ClassifieR 2.0: expanding interactive gene expression-based stratification to prostate and high-grade serous ovarian cancer.

• Authors : McCabe, Aideen^1,2 (AUTHOR) ; Quinn, Gerard P.^3,4 (AUTHOR); Jain, Suneil^4,5 (AUTHOR)

• Source: BMC Bioinformatics. 11/21/2024, Vol. 25 Issue 1, p1-13. 13p.

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CPMI: comprehensive neighborhood-based perturbed mutual information for identifying critical states of complex biological processes.

• Authors : Ren, Jing^1,2 (AUTHOR); Li, Peiluan^1,2 (AUTHOR) ; Yan, Jinling³ (AUTHOR)

• Source: BMC Bioinformatics. 6/15/2024, Vol. 25 Issue 1, p1-22. 22p.

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