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Conference

Automated design of dynamic programming schemes for RNA folding with pseudoknots

Subjects: Computational biology; Treewidth; Dynamic programming DPPotsdam; Germany

  • Source: WABI 2022 - 22nd Workshop on Algorithms in Bioinformatics ; https://inria.hal.science/hal-03676377 ; WABI 2022 - 22nd Workshop on Algorithms in Bioinformatics, Sep 2022, Potsdam, Germany

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Conference

Beyond Adjacency Maximization: Scaffold Filling for New String Distances

Subjects: kernelization; FPT algorithms; stringsWarsaw; Poland

  • Source: 28th Annual Symposium on Combinatorial Pattern Matchinghttps://hal.science/hal-0161567128th Annual Symposium on Combinatorial Pattern Matching, 2017, Warsaw, Poland.

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Conference

Extending the Hardness of RNA Secondary Structure Comparison

Subjects: NP-hardness; edit distance; arc-annotated sequencesHangzhou; China

  • Source: Proc. 1st International Symposium on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies (ESCAPE 2007) ; 1st International Symposium on Combinatorics, Algorithms, Probabilistic and

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Academic Journal

Lower bounding edit distances between permutations

Subjects: lower bounds; theoretical aspects of computational biology; edit distance

  • Source: ISSN: 0895-4801 ; SIAM Journal on Discrete Mathematics ; https://hal.science/hal-00826968 ; SIAM Journal on Discrete Mathematics, 2013, 27 (3), pp.1410-1428. ⟨10.1137/13090897X⟩.

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Academic Journal

Analyse des groupes de gènes co-exprimés : un outil automatique pour l'interprétation des expériences de biopuces (version étendue)

Subjects: Algorithms; Data Mining; Clustering

  • Source: ISSN: 1764-1667 ; Revue des Nouvelles Technologies de l'Information ; https://hal.science/hal-00361718 ; Revue des Nouvelles Technologies de l'Information, 2008, Classification : points de vue

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Conference

CREMSA: Compressed indexing of (ultra) large multiple sequence alignments

Subjects: Compression; Multiple sequence alignment; IndexingLiverpool United Kingdom; United Kingdom

  • Source: Bioinformatics ; ISMB/ECCB 2025 - 33rd International conference on Intelligent Systems for Molecular Biology and 24th European Conference on

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