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The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

• Authors : Swiss Institute of Bioinformatics Members, SIB

Subjects: 570 Life sciences; biology

• Source: Swiss Institute of Bioinformatics Members, SIB (2016). The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases.

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Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens.

• Authors : Huddleston, John; Hadfield, James; Sibley, Thomas R

Subjects: 610 Medicine & health; 360 Social problems & social services

• Source: Huddleston, John; Hadfield, James; Sibley, Thomas R; Lee, Jover; Fay, Kairsten; Ilcisin, Misja; Harkins, Elias; Bedford, Trevor; Neher, Richard A; Hodcroft, Emma B. (2021). Augur: a

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The International Virus Bioinformatics Meeting 2020.

• Authors : Hufsky, Franziska; Beerenwinkel, Niko; Meyer, Irmtraud M

Subjects: 630 Agriculture; 570 Life sciences; biology

• Source: Hufsky, Franziska; Beerenwinkel, Niko; Meyer, Irmtraud M; Roux, Simon; Cook, Georgia May; Kinsella, Cormac M; Lamkiewicz, Kevin; Marquet, Mike; Nieuwenhuijse, David F; Olendraite, Ingrida;

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The Third Annual Meeting of the European Virus Bioinformatics Center.

• Authors : Hufsky, Franziska; Ibrahim, Bashar; Modha, Sejal

Subjects: 570 Life sciences; biology; 630 Agriculture

• Source: Hufsky, Franziska; Ibrahim, Bashar; Modha, Sejal; Clokie, Martha R J; Deinhardt-Emmer, Stefanie; Dutilh, Bas E; Lycett, Samantha; Simmonds, Peter; Thiel, Volker; Abroi, Aare; Adriaenssens, Evelien M;

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The history and organization of the Workshop on Population and Speciation Genomics.

• Authors : Barth, Julia M I; Handley, Scott A; Kintzl, Daniel

Subjects: 570 Life sciences; biology

• Source: Barth, Julia M I; Handley, Scott A; Kintzl, Daniel; Leonard, Guy; Malinsky, Milan; Matschiner, Michael; Meyer, Britta S; Salzburger, Walter; Stefka, Jan; Trucchi, Emiliano (2023). The history and

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3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion.

• Authors : Gitchev, Todor; Zala, Gabriel; Meister, Peter

Subjects: 570 Life sciences; biology

• Source: Gitchev, Todor; Zala, Gabriel; Meister, Peter; Jost, Daniel (2022). 3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion.

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Prediction of recovery from multiple organ dysfunction syndrome in pediatric sepsis patients.

• Authors : Fan, Bowen; Klatt, Juliane; Moor, Michael M

Subjects: 610 Medicine & health

• Source: Fan, Bowen; Klatt, Juliane; Moor, Michael M; Daniels, Latasha A; Sanchez-Pinto, Lazaro N; Agyeman, Philipp K A; Schlapbach, Luregn J; Borgwardt, Karsten M (2022). Prediction of recovery from multiple

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CASPR, an analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection for long noncoding RNAs.

• Authors : Bergada Pijuan, Judith; Pulido Quetglas, Carlos; Vancura, Adrienne

Subjects: 610 Medicine & health

• Source: Bergada Pijuan, Judith; Pulido Quetglas, Carlos; Vancura, Adrienne; Johnson, Rory (2020). CASPR, an analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection

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Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.

• Authors : Junier, Thomas; Huber, Michael; Schmutz, Stefan

• Source: Junier, Thomas; Huber, Michael; Schmutz, Stefan; Kufner, Verena; Zagordi, Osvaldo; Neuenschwander, Stefan; Ramette, Alban; Kubacki, Jakub; Bachofen, Claudia; Qi, Weihong; Laubscher, Florian; Cordey,

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TemBERTure: advancing protein thermostability prediction with deep learning and attention mechanisms.

• Authors : Rodella, Chiara; Lazaridi, Symela; Lemmin, Thomas

Subjects: 570 Life sciences; biology; 610 Medicine & health

• Source: Rodella, Chiara; Lazaridi, Symela; Lemmin, Thomas (2024). TemBERTure: advancing protein thermostability prediction with deep learning and attention mechanisms.

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