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F-BIAS: Towards a distributed national core facility for bioimage analysis

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  • معلومة اضافية
    • Contributors:
      BioCore Nantes; Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre Hospitalier Universitaire de Nantes = Nantes University Hospital (CHU Nantes)-Nantes Université (Nantes Univ); Structure fédérative de recherche François Bonamy (Nantes Univ - SFR François Bonamy); Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Nantes Université - pôle Santé; Nantes Université (Nantes Univ)-Nantes Université (Nantes Univ); Hub d'analyse d'images - Image Analysis Hub (Platform) (IAH); Institut Pasteur Paris (IP)-Université Paris Cité (UPCité); BioCampus (BCM); Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM); BioImaging Cell and Tissue Core Facility (PICT-IBiSA); Institut Curie Paris; Sorbonne Université (SU); Centre de Biologie Intégrative (CBI); Université Toulouse III - Paul Sabatier (UT3); Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS); Bordeaux Imaging Center (BIC); Université de Bordeaux (UB)-Institut François Magendie-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS); Santé Lyon Est - Louis Léopold Ollier; Université Claude Bernard Lyon 1 (UCBL); Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS); Biologie du Développement et Cellules souches (Département) (CNRS UMR3738); Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité); Institut de Génétique Moléculaire de Montpellier (IGMM); Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM); Institut de Biologie Moléculaire des Plantes (IBMP); Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS); Structure Fédérative de Recherche en Biologie et Santé de Rennes (Biosit : Biologie - Santé - Innovation Technologique); Facility for Artificial Intelligence and Image Analysis (FAIIA); F-BIAS is supported by the Agence Nationale de la Recherche through France-BioImaging (ANR-24-INBS-0005 FBI BIOGEN, to MA, AM and for core funding), the LABEX Cortex (ANR-11-577 LABX-0042, to MB) of University Lyon 1 within the program “Investissements d’Avenir” and the institutes that host its members, listed in the author affiliations.; ANR-24-INBS-0005,FBI (BIOGEN) (JVCE),France-BioImaging (Biological Imaging Next-Generation Instrument)(2024); ANR-11-LABX-0042,CORTEX,Construction, Fonction Cognitive et Réhabilitation du Cerveau(2011)
    • بيانات النشر:
      CCSD
      PLOS
    • الموضوع:
      2025
    • Collection:
      Université de Montpellier: HAL
    • نبذة مختصرة :
      International audience ; We discuss in this article the creation and organization of a national core facility for bioimage analysis, based on a distributed team. F-BIAS federates bioimage analysts across France and relies on them to deliver services to the researchers of this territory. The main challenge in implementing this structure is to ensure significant scientific value to the analysts, thereby encouraging their active participation and persuading their respective host teams to support their involvement. F-BIAS accomplished this by creating a professional network that mitigates the negative effects of isolation experienced by its members, who are often the sole bioimage analyst within their local teams, and fosters the development of their technical skills. In a second phase we capitalized on F-BIAS to create a virtual, remotely-operating core facility for bioimage analysis, offering consultations and collaborative project services to the scientific community of France. The services are organized so that they also contribute to the technical proficiency of the analysts. To promote the creation of similar structures, we present and discuss here the organization of this nationally distributed bioimage analysis service core, highlighting successes and challenges.
    • Relation:
      info:eu-repo/semantics/altIdentifier/pmid/40493670; PUBMED: 40493670; PUBMEDCENTRAL: PMC12151432
    • الرقم المعرف:
      10.1371/journal.pcbi.1013058
    • الدخول الالكتروني :
      https://hal.science/hal-05165608
      https://hal.science/hal-05165608v1/document
      https://hal.science/hal-05165608v1/file/journal.pcbi.1013058.pdf
      https://doi.org/10.1371/journal.pcbi.1013058
    • Rights:
      http://creativecommons.org/licenses/by/ ; info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.D15919F7