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Academic Journal

A Simple-to-Use R Package for Mimicking Study Data by Simulations

Authors : Koliopanos, Giorgos; Ojeda, Francisco; Ziegler, Andreas

Source: Methods of Information in Medicine ; volume 62, issue 03/04, page 119-129 ; ISSN 0026-1270 2511-705X

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Academic Journal

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data

Authors : Ying Hu; Chunhua Yan; Chih-Hao Hsu

Subjects: Neoplasms. Tumors. Oncology. Including cancer and carcinogens; RC254-282

Source: Cancer Informatics, Vol 2014, Iss 13, Pp 13-20 (2014)

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Academic Journal

Number of SEs identified in different cancers.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Flowchart to define cell/cancer-specific CEs.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Median width and total number of merged SEs and CEs based on different overlap cutoffs.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Genome-wide priors of the inactive and active enhancer groups estimated across 60 cancer cell lines.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Vertical comparison of H3K27Ac signals across cancers refines enhancer activity consensus in individual samples.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Extra examples illustrating the improved sensitivity in detecting true active CEs by mixture models compared to peak calling.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Extra examples illustrating the improved specificity in detecting true inactive CEs by mixture models compared to peak calling.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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Academic Journal

Overall prevalence of active CEs identified by mixture models and peak calling.

Authors : Xiang Liu; Nancy Gillis; Chang Jiang

Subjects: Genetics; Neuroscience; Biotechnology

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فلترة النتائج

A Simple-to-Use R Package for Mimicking Study Data by Simulations

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data

Number of SEs identified in different cancers.

Flowchart to define cell/cancer-specific CEs.

Median width and total number of merged SEs and CEs based on different overlap cutoffs.

Genome-wide priors of the inactive and active enhancer groups estimated across 60 cancer cell lines.

Vertical comparison of H3K27Ac signals across cancers refines enhancer activity consensus in individual samples.

Extra examples illustrating the improved sensitivity in detecting true active CEs by mixture models compared to peak calling.

Extra examples illustrating the improved specificity in detecting true inactive CEs by mixture models compared to peak calling.

Overall prevalence of active CEs identified by mixture models and peak calling.

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