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OrthoRefine: automated enhancement of prior ortholog identification via synteny.

• Authors : Ludwig J; Institute of Bioinformatics, The University of Georgia, Athens, GA, 30602, USA. .; Mrázek J

Subjects: Synteny* ; Software*; Algorithms

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Apr 25; Vol. 25 (1), pp. 163. Date of Electronic Publication: 2024 Apr 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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The promise and pitfalls of synteny in phylogenomics.

• Authors : Steenwyk JL; Howard Hughes Medical Institute, University of California, Berkeley, California, United States of America.; Department of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.

Subjects: Phylogeny* ; Synteny* ; Genomics*/Genomics*/Genomics*/methods

• Source: PLoS biology [PLoS Biol] 2024 May 20; Vol. 22 (5), pp. e3002632. Date of Electronic Publication: 2024 May 20 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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SynGAP: a synteny-based toolkit for gene structure annotation polishing

• Authors : Fengqi Wu; Yingxiao Mai; Chengjie Chen

Subjects: SynGAP; Gene structure annotation; Synteny

• Source: Genome Biology, Vol 25, Iss 1, Pp 1-16 (2024)

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OrthoRefine: automated enhancement of prior ortholog identification via synteny

• Authors : J. Ludwig; J. Mrázek

Subjects: Ortholog; Synteny; Homolog

• Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-19 (2024)

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JBrowse 2: a modular genome browser with views of synteny and structural variation

• Authors : Diesh, Colin; Stevens, Garrett J; Xie, Peter

Subjects: Information and Computing Sciences; Biological Sciences; Genetics

• Source: Genome Biology. 24(1)

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Co-regulation and synteny of GFM2 and NSA2 links ribosomal function in mitochondria and the cytosol with chronic kidney disease

• Authors : Minjie Zhang; Christer Hogstrand; Paola Pontrelli

Subjects: NSA2; Ribosome biogenesis; Protein synthesis

• Source: Molecular Medicine, Vol 30, Iss 1, Pp 1-16 (2024)

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OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.

• Authors : Altenhoff, Adrian M^1,2 (AUTHOR); Warwick Vesztrocy, Alex^1,3 (AUTHOR); Bernard, Charles^1,3 (AUTHOR)

Subjects: *GENE families; *COMPARATIVE genomics; *ECOSYSTEMS

• Source: Nucleic Acids Research. 1/5/2024, Vol. 52 Issue D1, pD513-D521. 9p.

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بررسی سینتنی بلوکهای ژنی pizh و pigm عامل مقاومت به بیماری بلاست برنج در ۱۱ گونه Oryza و سه گونه خویشاوند.

• Authors : سهند ساسانی¹; سجاد رشیدی منفرد¹ ; دانیال کهریزی¹

• Source: Journal of Cereal Biotechnology & Biochemistry / Biyutichnuluzhī va Biyushīmī-i Ghallāt. Apr2024, Vol. 3 Issue 1, p61-73. 13p.

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KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.

• Authors : Moore MP; School of Life Sciences, University of Warwick, Coventry, United Kingdom.; Department of Statistics, University of Warwick, Coventry, United Kingdom.

Subjects: Genome, Bacterial* ; Polymorphism, Single Nucleotide*/Polymorphism, Single Nucleotide*/Polymorphism, Single Nucleotide*/genetics; Synteny

• Source: PLoS genetics [PLoS Genet] 2024 Apr 29; Vol. 20 (4), pp. e1011184. Date of Electronic Publication: 2024 Apr 29 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet

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Evolutionary and synteny analysis of HIS1, BADH2, GBSS1, and GBSS2 in rice: insights for effective introgression breeding strategies.

• Authors : Lim I; Department of Plant Science, Gangneung-Wonju National University, Gangneung, South Korea.; Park YJ

Subjects: Oryza*/Oryza*/Oryza*/genetics; DNA Copy Number Variations ; Phylogeny

• Source: Scientific reports [Sci Rep] 2024 Mar 04; Vol. 14 (1), pp. 5226. Date of Electronic Publication: 2024 Mar 04.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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