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TCRcost: a deep learning model utilizing TCR 3D structure for enhanced of TCR–peptide binding

• Authors : Fan Li; Xinyang Qian; Xiaoyan Zhu

Subjects: systems immunology; T-cell receptor; peptide binding

• Source: Frontiers in Genetics, Vol 15 (2024)

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GAPS: a geometric attention-based network for peptide binding site identification by the transfer learning approach.

• Authors : Zhu, Cheng¹ (AUTHOR); Zhang, Chengyun² (AUTHOR); Shang, Tianfeng² (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2024, Vol. 25 Issue 4, p1-15. 15p.

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Bioinformatics design of peptide binding to the human cardiac troponin I (cTnI) in biosensor development for myocardial infarction diagnosis.

• Authors : Jauhar, Muhammad Miftah^1,2 (AUTHOR); Damairetha, Filasta Rachel³ (AUTHOR); Mardliyati, Etik⁴ (AUTHOR)

Subjects: *TROPONIN I; *PEPTIDES; *MYOCARDIAL infarction

• Source: PLoS ONE. 10/22/2024, Vol. 19 Issue 10, p1-22. 22p.

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GIHP: Graph convolutional neural network based interpretable pan-specific HLA-peptide binding affinity prediction

• Authors : Lingtao Su; Yan Yan; Bo Ma

Subjects: HLA-peptide binding; model interpretation; GCNN

• Source: Frontiers in Genetics, Vol 15 (2024)

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Understanding Aβ Peptide Binding to Lipid Membranes: A Biophysical Perspective †.

• Authors : Ahyayauch, Hasna^1,2,3 (AUTHOR) ; Masserini, Massimo E.⁴ (AUTHOR) ; Alonso, Alicia¹ (AUTHOR)

Subjects: *MEMBRANE lipids; *PEPTIDES; *ALZHEIMER'S disease

• Source: International Journal of Molecular Sciences. Jun2024, Vol. 25 Issue 12, p6401. 22p.

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A Bayesian approach to estimate MHC-peptide binding threshold.

• Authors : Liu, Ran¹ (AUTHOR); Hu, Ye-Fan^2,3,4 (AUTHOR); Huang, Jian-Dong^2,5,6,7,8 (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2023, Vol. 24 Issue 4, p1-9. 9p.

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Screening Peptide-Binding Partners for GenX via Phage Display.

• Authors : Burton, Kameron^1,2 (AUTHOR); Ghadami, Samaneh² (AUTHOR); Dellinger, Kristen² (AUTHOR)

Subjects: *POISONS; *ION exchange resins; *MOLECULAR dynamics

• Source: International Journal of Molecular Sciences. Mar2024, Vol. 25 Issue 5, p2686. 8p.

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Structure-aware deep model for MHC-II peptide binding affinity prediction.

• Authors : Yu, Ying¹ (AUTHOR); Zu, Lipeng² (AUTHOR); Jiang, Jiaye¹ (AUTHOR)

• Source: BMC Genomics. 1/30/2024, Vol. 25 Issue 1, p1-10. 10p.

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Structure-aware deep model for MHC-II peptide binding affinity prediction

• Authors : Ying Yu; Lipeng Zu; Jiaye Jiang

Subjects: MHC-II molecules; Affinity prediction; Positional embedding

• Source: BMC Genomics, Vol 25, Iss 1, Pp 1-10 (2024)

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Identification of Histone Peptide Binding Specificity and Small-Molecule Ligands for the TRIM33α and TRIM33β Bromodomains

• Authors : Sekirnik, Angelina R; Reynolds, Jessica K; See, Larissa

Subjects: Biochemistry and Cell Biology; Biological Sciences; Underpinning research

• Source: ACS Chemical Biology. 17(10)

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