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  • 1-10 ل  20,055 نتائج ل ""Molecular Sequence Annotation""

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Academic Journal

Chromosome-level genome assembly and anticoagulant protein annotation of the buffalo leech Hirudinaria bpling (Hirudinea: Hirudinidae).

  • Authors : Khan MS; College of Medicine, Xi'an International University, Xi'an, 71007, China. .; Müller C

Subjects: Leeches*/Leeches*/Leeches*/genetics ; Leeches*/Leeches*/Leeches*/classification ; Genome*

  • Source: BMC genomics [BMC Genomics] 2025 Jun 03; Vol. 26 (1), pp. 558. Date of Electronic Publication: 2025 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

annATAC: automatic cell type annotation for scATAC-seq data based on language model.

  • Authors : Cui L; College of Life Science, Northeast Forestry University, Harbin, 150040, China.; Wang F

Subjects: Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Molecular Sequence Annotation*/Molecular Sequence Annotation*/Molecular Sequence Annotation*/methods ; Software*

  • Source: BMC biology [BMC Biol] 2025 May 28; Vol. 23 (1), pp. 145. Date of Electronic Publication: 2025 May 28.Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007

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Academic Journal

Improved transcriptome assembly and functional annotation of Pleurodeles waltl for regeneration research.

  • Authors : Yassouf MY; Department of Stem Cell Biology, Nagasaki University Graduate School of Biomedical Sciences, Sakamoto, Nagasaki, Japan.; Department of Stem Cell Biology, Atomic Bomb Disease Institute, Sakamoto, Nagasaki, Japan.

Subjects: Regeneration*/Regeneration*/Regeneration*/genetics ; Transcriptome* ; Molecular Sequence Annotation*

  • Source: PloS one [PLoS One] 2025 May 14; Vol. 20 (5), pp. e0323196. Date of Electronic Publication: 2025 May 14 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Expanding kinetoplastid genome annotation through protein structure comparison.

  • Authors : Trinidad-Barnech JM; Laboratorio de Bioinformática, Departamento de Genómica, Instituto de Investigaciones Biológicas Clemente Estable, MEC, Montevideo, Uruguay.; Laboratorio de Genómica Evolutiva, Sección Biomatemática, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay.

Subjects: Kinetoplastida*/Kinetoplastida*/Kinetoplastida*/genetics ; Protozoan Proteins*/Protozoan Proteins*/Protozoan Proteins*/genetics ; Protozoan Proteins*/Protozoan Proteins*/Protozoan Proteins*/chemistry

  • Source: PLoS pathogens [PLoS Pathog] 2025 Apr 21; Vol. 21 (4), pp. e1013120. Date of Electronic Publication: 2025 Apr 21 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes.

  • Authors : Giraud D; UR AGAP Corse, INRAE, Institut Agro, CIRAD, University of Montpellier, San Giuliano, F-20230, France. .; Choisne N

Subjects: Citrus*/Citrus*/Citrus*/genetics ; Genome, Plant* ; Molecular Sequence Annotation*

  • Source: BMC genomic data [BMC Genom Data] 2025 Apr 18; Vol. 26 (1), pp. 30. Date of Electronic Publication: 2025 Apr 18.Publisher: BioMed Central Country of Publication: England NLM ID: 101775394 Publication Model: Electronic Cited Medium: Internet ISSN: 2730-6844

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Academic Journal

scTrans: Sparse attention powers fast and accurate cell type annotation in single-cell RNA-seq data.

  • Authors : Zou Z; College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China.; Liu Y

Subjects: Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/statistics & numerical data ; RNA-Seq*/RNA-Seq*/RNA-Seq*/methods

  • Source: PLoS computational biology [PLoS Comput Biol] 2025 Apr 04; Vol. 21 (4), pp. e1012904. Date of Electronic Publication: 2025 Apr 04 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Conservation assessment of human splice site annotation based on a 470-genome alignment.

  • Authors : Minkin I; Department of Biomedical Engineering, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, United States.; Center for Computational Biology, Johns Hopkins University, 3100 Wyman Park Drive, Baltimore, MD 21211, United States.

Subjects: RNA Splice Sites* ; Molecular Sequence Annotation*/Molecular Sequence Annotation*/Molecular Sequence Annotation*/methods ; Genome, Human*

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Mar 20; Vol. 53 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

stAI: a deep learning-based model for missing gene imputation and cell-type annotation of spatial transcriptomics.

  • Authors : Zou G; School of Mathematical Sciences, Fudan University, Shanghai 200433, China.; Shen Q

Subjects: Deep Learning* ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Transcriptome*/Transcriptome*/Transcriptome*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 27; Vol. 53 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

High-Performance Genome Annotation for a Safer and Faster-Developing Phage Therapy.

  • Authors : Culot A; Rime Bioinformatics SAS, 99120 Palaiseau, France.; Abriat G

Subjects: Genome, Viral* ; Bacteriophages*/Bacteriophages*/Bacteriophages*/genetics ; Molecular Sequence Annotation*/Molecular Sequence Annotation*/Molecular Sequence Annotation*/methods

  • Source: Viruses [Viruses] 2025 Feb 25; Vol. 17 (3). Date of Electronic Publication: 2025 Feb 25.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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Academic Journal

scFTAT: a novel cell annotation method integrating FFT and transformer.

  • Authors : Tang B; College of Information Science and Engineering, Hohai University, Jiangsu, 213200, China. .; Key Laboratory of Maritime Intelligent Cyberspace Technology (Hohai University), Ministry of Education, Jiangsu, 213200, China. .

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Fourier Analysis* ; Molecular Sequence Annotation*/Molecular Sequence Annotation*/Molecular Sequence Annotation*/methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 Feb 25; Vol. 26 (1), pp. 62. Date of Electronic Publication: 2025 Feb 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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  • 1-10 ل  20,055 نتائج ل ""Molecular Sequence Annotation""