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ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs

• Authors : Westrin, Karl Johan, 1989; Kretzschmar, Warren W.; Emanuelsson, Olof

Subjects: De novo transcriptome assembly; Guiding contigs; Isoform assembly

• Source: BMC Bioinformatics. 25(1)

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Taxometer: Improving taxonomic classification of metagenomics contigs

• Authors : Svetlana Kutuzova; Mads Nielsen; Pau Piera

Subjects: Science

• Source: Nature Communications, Vol 15, Iss 1, Pp 1-9 (2024)

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PhaBOX: A web server for identifying and characterizing phage contigs in metagenomic data

• Authors : Shang, Jiayu; Peng, Cheng; Liao, Herui

Subjects: Quantitative Biology - Genomics

• Source: published on Bioinformatics Advances 2023

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Taxometer:Improving taxonomic classification of metagenomics contigs

• Authors : Kutuzova, Svetlana; Nielsen, Mads; Piera, Pau

Subjects: article

• Source: Kutuzova , S , Nielsen , M , Piera , P , Nissen , J N & Rasmussen , S 2024 , ' Taxometer : Improving taxonomic classification of metagenomics contigs ' , Nature

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Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

• Authors : Ernestina Hauptfeld; Nikolaos Pappas; Sandra van Iwaarden

Subjects: Science

• Source: Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)

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Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

• Authors : Hauptfeld, Ernestina; Pappas, Nikolaos; van Iwaarden, Sandra

Subjects: Article

• Source: Nature Communications vol.15 (2024) date: 2024-04-19 nr.1 [ISSN 2041-1723]

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EndHiC: assemble large contigs into chromosomal-level scaffolds using the Hi-C links from contig ends

• Authors : Wang, Sen; Wang, Hengchao; Jiang, Fan

Subjects: Quantitative Biology - Genomics

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Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics

• Authors : Enhui Wu; Vijini Mallawaarachchi; Jinzhi Zhao

Subjects: Taxonomic annotation; Metaproteomics; Metagenomics

• Source: Microbiome, Vol 12, Iss 1, Pp 1-14 (2024)

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Effective binning of metagenomic contigs using contrastive multi-view representation learning

• Authors : Ziye Wang; Ronghui You; Haitao Han

Subjects: Science

• Source: Nature Communications, Vol 15, Iss 1, Pp 1-14 (2024)

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Bacteriophage classification for assembled contigs using Graph Convolutional Network

• Authors : Shang, Jiayu; Jiang, Jingzhe; Sun, Yanni

Subjects: Quantitative Biology - Genomics; Computer Science - Machine Learning

• Source: Bioinformatics, Volume 37, Issue Supplement1, July 2021, Pages 25-33

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