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DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.

• Authors : Liu, Tong¹ (AUTHOR); Wang, Zheng¹ (AUTHOR)

• Source: PLoS Computational Biology. 7/13/2023, Vol. 19 Issue 7, p1-21. 21p. 2 Diagrams, 8 Graphs.

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Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis

• Authors : Denise Thiel; Nataša Djurdjevac Conrad; Evgenia Ntini

Subjects: lncRNA; Modules; Network analysis

• Source: BMC Bioinformatics, Vol 20, Iss 1, Pp 1-16 (2019)

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ChIAMM: A Mixture Model for Statistical Analysis of Long-Range Chromatin Interactions From ChIA-PET Experiments

• Authors : Yibeltal Arega; Hao Jiang; Shuangqi Wang

Subjects: ChIA-PET; chromatin interactions; genome-wide

• Source: Frontiers in Genetics, Vol 11 (2020)

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Hierarchical cooperation of transcription factors from integration analysis of DNA sequences, ChIP-Seq and ChIA-PET data

• Authors : Ruimin Wang; Yunlong Wang; Xueying Zhang

Subjects: Chromatin loop; Transcription factor cooperation; Hierarchy and dynamics

• Source: BMC Genomics, Vol 20, Iss S3, Pp 1-13 (2019)

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Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)

• Authors : Guoliang Li; Tongkai Sun; Huidan Chang

Subjects: chromatin interactions; genome-wide; high-throughputagris

• Source: Genes; Volume 10; Issue 7; Pages: 554

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ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

• Authors : Byoungkoo Lee; Ping Wang; Yijun Ruan

Subjects: 0303 health sciences; Loop (graph theory); Data processing

• Source: Science Advances

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ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.

• Authors : Guipeng Li¹; Yang Chen¹; Snyder, Michael P.²

• Source: Nucleic Acids Research. 1/9/2017, Vol. 45 Issue 1, p1-10. 10p.

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Chromatin structure and gene transcription of recombinant p53 adenovirus vector within host

• Authors : Duo Ning; Yuqing Deng; Simon Zhongyuan Tian

Subjects: Ad-p53; ChIA-PET; p53

• Source: Frontiers in Molecular Biosciences, Vol 12 (2025)

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Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.

• Authors : Buisine, Nicolas¹; Ruan, Xiaoan^2,3,4; Bilesimo, Patrice^1,5

Subjects: *XENOPUS; *VERTEBRATE genetics; *GENE regulatory networks

• Source: PLoS ONE. 9/8/2015, Vol. 10 Issue 9, p1-27. 27p.

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Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)

• Authors : Qiangwei Zhou; Liuyang Cai; Huidan Chang

Subjects: 0301 basic medicine; lcsh:QH426-470; Computer science

• Source: Genes, Vol 10, Iss 7, p 554 (2019)GenesVolume 10Issue 7

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