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Academic Journal

Predicting splicing patterns from the transcription factor binding sites in the promoter with deep learning.

  • Authors : Lin TC; Institute of Information Science, Academia Sinica, Taipei, 11529, Taiwan.; Tsai CH

Subjects: Promoter Regions, Genetic* ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics

  • Source: BMC genomics [BMC Genomics] 2024 Sep 03; Vol. 25 (Suppl 3), pp. 830. Date of Electronic Publication: 2024 Sep 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Regulated splicing of large exons is linked to phase-separation of vertebrate transcription factors.

  • Authors : Kawachi T; Division of Neurogenetics, Center for Neurological Diseases and Cancer, Nagoya University Graduate School of Medicine, Nagoya, Japan.; Masuda A

Subjects: Exons*; Serine-Arginine Splicing Factors/Serine-Arginine Splicing Factors/Serine-Arginine Splicing Factors/*genetics ; Transcription Factors/Transcription Factors/Transcription Factors/*genetics

  • Source: The EMBO journal [EMBO J] 2021 Nov 15; Vol. 40 (22), pp. e107485. Date of Electronic Publication: 2021 Oct 04.Publisher: Wiley Blackwell Country of Publication: England NLM ID: 8208664 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Biallelic structural variants in three patients with ERCC8-related Cockayne syndrome and a potential pitfall of copy number variation analysis.

  • Authors : Watanabe D; Center for Medical Genetics, Keio University School of Medicine, 35 Shinanomachi, Shinjuku, Tokyo, 160-8582, Japan.; Department of Pediatrics, Yamanashi University, Yamanashi, Japan.

Subjects: Cockayne Syndrome*/Cockayne Syndrome*/Cockayne Syndrome*/genetics ; DNA Copy Number Variations* ; DNA Repair Enzymes*/DNA Repair Enzymes*/DNA Repair Enzymes*/genetics

  • Source: Scientific reports [Sci Rep] 2024 Aug 26; Vol. 14 (1), pp. 19741. Date of Electronic Publication: 2024 Aug 26.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

TP63 truncating mutation causes increased cell apoptosis and premature ovarian insufficiency by enhanced transcriptional activation of CLCA2.

  • Authors : Fan Y; Central Laboratory, Beijing Obstetrics and Gynecology Hospital, Capital Medical University, Beijing Maternal and Child Health Care Hospital, Beijing, 100006, China.; Chen S

Subjects: Menopause, Premature*/Menopause, Premature*/Menopause, Premature*/genetics ; Primary Ovarian Insufficiency*/Primary Ovarian Insufficiency*/Primary Ovarian Insufficiency*/genetics ; Primary Ovarian Insufficiency*/Primary Ovarian Insufficiency*/Primary Ovarian Insufficiency*/metabolism

  • Source: Journal of ovarian research [J Ovarian Res] 2024 Mar 25; Vol. 17 (1), pp. 67. Date of Electronic Publication: 2024 Mar 25.Publisher: BioMed Central Country of Publication: England NLM ID: 101474849 Publication Model: Electronic Cited Medium: Internet ISSN: 1757-2215

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Academic Journal

Allele specific binding of histone modifications and a transcription factor does not predict allele specific expression in correlated ChIP-seq peak-exon pairs.

  • Authors : Prowse-Wilkins CP; Faculty of Veterinary & Agricultural Science, The University of Melbourne, Parkville, VIC, 3010, Australia. .; Agriculture Victoria, AgriBio, Centre for AgriBiosciences, Bundoora, VIC, 3083, Australia. .

Subjects: Histone Code*/Histone Code*/Histone Code*/genetics ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics; Female

  • Source: Scientific reports [Sci Rep] 2023 Sep 20; Vol. 13 (1), pp. 15596. Date of Electronic Publication: 2023 Sep 20.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Oxidative stress controls the choice of alternative last exons via a Brahma-BRCA1-CstF pathway.

  • Authors : Fontana GA; Department of Biotechnology and Biosciences, University of Milan-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy.; Rigamonti A

Subjects: Alternative Splicing* ; Exons* ; Oxidative Stress*/Oxidative Stress*/Oxidative Stress*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2017 Jan 25; Vol. 45 (2), pp. 902-914. Date of Electronic Publication: 2016 Sep 02.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

CLK1/SRSF5 pathway induces aberrant exon skipping of METTL14 and Cyclin L2 and promotes growth and metastasis of pancreatic cancer.

  • Authors : Chen S; Shengli Clinical Medical College of Fujian Medical University, Fujian Medical University, No. 134, East Street, Fuzhou, 350001, Fujian Province, People's Republic of China. .; Department of Hepatobiliary Pancreatic Surgery, Fujian Provincial Hospital, Fuzhou, 350001, People's Republic of China. .

Subjects: Exons*; Cyclins/Cyclins/Cyclins/*metabolism ; Methyltransferases/Methyltransferases/Methyltransferases/*metabolism

  • Source: Journal of hematology & oncology [J Hematol Oncol] 2021 Apr 13; Vol. 14 (1), pp. 60. Date of Electronic Publication: 2021 Apr 13.Publisher: Biomed Central Country of Publication: England NLM ID: 101468937 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-8722

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Academic Journal

TRAP150 activates splicing in composite terminal exons.

  • Authors : Lee KM; Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.; Tarn WY

Subjects: Alternative Splicing* ; Exons*; DNA-Binding Proteins/DNA-Binding Proteins/DNA-Binding Proteins/*metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2014 Nov 10; Vol. 42 (20), pp. 12822-32. Date of Electronic Publication: 2014 Oct 17.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

The evolution of novelty in conserved genes; evidence of positive selection in the Drosophila fruitless gene is localised to alternatively spliced exons.

  • Authors : Parker DJ; Centre for Biological Diversity, School of Biology, University of St Andrews, Scotland, UK.; Gardiner A

Subjects: Alternative Splicing* ; Exons*; Drosophila/Drosophila/Drosophila/*genetics

  • Source: Heredity [Heredity (Edinb)] 2014 Mar; Vol. 112 (3), pp. 300-6. Date of Electronic Publication: 2013 Oct 23.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0373007 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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