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  • 1-10 ل  11,931 نتائج ل ""Alignment""

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Subject : sequence homology, amino acid
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Academic Journal

Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination.

  • Authors : Yamamori Y; Artificial Intelligence Research Center (AIRC), National Institute of Advanced Industrial Science and Technology (AIST), 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan.; Tomii K

Subjects: Protein Conformation* ; Sequence Alignment* ; Sequence Homology, Amino Acid*

  • Source: International journal of molecular sciences [Int J Mol Sci] 2022 Feb 10; Vol. 23 (4). Date of Electronic Publication: 2022 Feb 10.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly.

  • Authors : Zhong C; Informatics Department, J. Craig Venter Institute, La Jolla, CA, 92037, USA.; Yang Y

Subjects: Algorithms* ; Databases, Protein* ; Metagenome*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2016 Aug 31; Vol. 17 Suppl 8, pp. 283. Date of Electronic Publication: 2016 Aug 31.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions.

  • Authors : Abnousi A; School of EECS, Washington State University, Pullman, WA, United States of America.; Broschat SL

Subjects: Sequence Analysis, Protein* ; Sequence Homology, Amino Acid*; Conserved Sequence/Conserved Sequence/Conserved Sequence/*genetics

  • Source: PloS one [PLoS One] 2016 Aug 23; Vol. 11 (8), pp. e0161338. Date of Electronic Publication: 2016 Aug 23 (Print Publication: 2016).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Flexibility in MuA transposase family protein structures: functional mapping with scanning mutagenesis and sequence alignment of protein homologues.

  • Authors : Rasila TS; Institute of Biotechnology, Viikki Biocenter, University of Helsinki, Helsinki, Finland.; Vihinen M

Subjects: Computational Biology* ; Mutagenesis* ; Sequence Alignment*

  • Source: PloS one [PLoS One] 2012; Vol. 7 (5), pp. e37922. Date of Electronic Publication: 2012 May 29.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

webPRC: the Profile Comparer for alignment-based searching of public domain databases.

  • Authors : Brandt BW; Centre for Integrative Bioinformatics (IBIVU), VU University Amsterdam, The Netherlands. ; Heringa J

Subjects: Protein Structure, Tertiary* ; Sequence Alignment* ; Sequence Homology, Amino Acid*

  • Source: Nucleic acids research [Nucleic Acids Res] 2009 Jul; Vol. 37 (Web Server issue), pp. W48-52. Date of Electronic Publication: 2009 May 06.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Comparison of histone-like HU protein DNA-binding properties and HU/IHF protein sequence alignment.

  • Authors : Kamashev D; Kurchatov Complex of NBICS-Technologies, National Research Center «Kurchatov Institute», Moscow, Russian Federation.; Agapova Y

Subjects: Sequence Homology, Amino Acid*; Bacterial Proteins/Bacterial Proteins/Bacterial Proteins/*metabolism ; DNA, Bacterial/DNA, Bacterial/DNA, Bacterial/*metabolism

  • Source: PloS one [PLoS One] 2017 Nov 13; Vol. 12 (11), pp. e0188037. Date of Electronic Publication: 2017 Nov 13 (Print Publication: 2017).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

AlignNemo: a local network alignment method to integrate homology and topology.

  • Authors : Ciriello G; Department of Information Engineering, University of Padova, Padova, Italy. ; Mina M

Subjects: Sequence Homology, Amino Acid*; Proteins/Proteins/Proteins/*chemistry ; Sequence Alignment/Sequence Alignment/Sequence Alignment/*methods

  • Source: PloS one [PLoS One] 2012; Vol. 7 (6), pp. e38107. Date of Electronic Publication: 2012 Jun 12.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.

  • Authors : Jung I; Department of Bio and Brain Engineering, KAIST, Daejeon, 305-701, South Korea. ; Lee J

Subjects: Linear Models* ; Protein Structure, Secondary* ; Sequence Homology, Amino Acid*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2008 Jul 01; Vol. 9, pp. 298. Date of Electronic Publication: 2008 Jul 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Dynamic use of multiple parameter sets in sequence alignment.

  • Authors : Huang X; Department of Computer Science, Iowa State University, Ames, IA 50011-1040, USA. ; Brutlag DL

Subjects: Algorithms* ; Sequence Homology, Amino Acid*; Sequence Alignment/Sequence Alignment/Sequence Alignment/*methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2007; Vol. 35 (2), pp. 678-86. Date of Electronic Publication: 2006 Dec 19.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information.

  • Authors : Simossis VA; Bioinformatics Section, Faculty of Sciences, Vrije Universiteit De Boelelaan 1081A, 1081 HV, Amsterdam, The Netherlands.; Heringa J

Subjects: Protein Structure, Secondary* ; Sequence Homology, Amino Acid* ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2005 Jul 01; Vol. 33 (Web Server issue), pp. W289-94.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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  • 1-10 ل  11,931 نتائج ل ""Alignment""