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  • 1-10 ل  1,602 نتائج ل ""Databases, Protein""
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Academic Journal

Improvements in viral gene annotation using large language models and soft alignments.

  • Authors : Harrigan WL; Hawai'i Institute of Marine Biology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.; Ferrell BD

Subjects: Molecular Sequence Annotation*/Molecular Sequence Annotation*/Molecular Sequence Annotation*/methods ; Sequence Alignment*/Sequence Alignment*/Sequence Alignment*/methods ; Algorithms*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Apr 25; Vol. 25 (1), pp. 165. Date of Electronic Publication: 2024 Apr 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Scoring alignments by embedding vector similarity.

  • Authors : Ashrafzadeh S; Department of Computer Science, University of Western Ontario, London, N6A 5B7, Ontario, Canada.; Golding GB

Subjects: Sequence Alignment*/Sequence Alignment*/Sequence Alignment*/methods ; Algorithms* ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

RaacLogo: a new sequence logo generator by using reduced amino acid clusters.

  • Authors : Zheng L; State key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University.; Liu D

Subjects: Algorithms* ; Amino Acid Sequence* ; Databases, Protein*

  • Source: Briefings in bioinformatics [Brief Bioinform] 2021 May 20; Vol. 22 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Structural motifs in protein cores and at protein-protein interfaces are different.

  • Authors : Hadarovich A; Computational Biology Program, The University of Kansas, Lawrence, Kansas, USA.; United Institute of Informatics Problems, National Academy of Sciences, Minsk, Belarus.

Subjects: Databases, Protein* ; Protein Interaction Mapping* ; Sequence Alignment*

  • Source: Protein science : a publication of the Protein Society [Protein Sci] 2021 Feb; Vol. 30 (2), Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium:

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Academic Journal

Substitution scoring matrices for proteins - An overview.

  • Authors : Trivedi R; Laboratory of Computational Biology, Centre for DNA Fingerprinting and Diagnostics, Uppal, Hyderabad, Telangana, India.; Graduate School, Manipal Academy of Higher Education, Manipal, Karnataka, India.

Subjects: Algorithms* ; Databases, Protein* ; Evolution, Molecular*

  • Source: Protein science : a publication of the Protein Society [Protein Sci] 2020 Nov; Vol. 29 (11), Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium:

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Academic Journal

Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments.

  • Authors : Neuwald AF; Institute for Genome Sciences.; Department of Biochemistry & Molecular Biology, University of Maryland School of Medicine, 670 W. Baltimore Street, Baltimore, MD 21201, USA.

Subjects: Databases, Protein* ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/genetics

  • Source: Database : the journal of biological databases and curation [Database (Oxford)] 2020 Jan 01; Vol. 2020.Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463

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Academic Journal

Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets.

  • Authors : Nute M; Department of Statistics, University of Illinois at Urbana-Champaign, 725 S Wright St #101, Champaign, IL 61820, USA.; Saleh E

Subjects: Databases, Protein* ; Models, Statistical*; Classification/Classification/Classification/*methods

  • Source: Systematic biology [Syst Biol] 2019 May 01; Vol. 68 (3), pp. 396-411.Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database.

  • Authors : Islamaj R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.; Wilbur WJ

Subjects: Algorithms* ; Data Curation* ; Databases, Protein*

  • Source: Database : the journal of biological databases and curation [Database (Oxford)] 2019 Jan 01; Vol. 2019.Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463

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Academic Journal

Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D.

  • Authors : Yang M; Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, China.; Zhang W

Subjects: Algorithms* ; Databases, Protein* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: Database : the journal of biological databases and curation [Database (Oxford)] 2019 Jan 01; Vol. 2019.Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463

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Academic Journal

PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.

  • Authors : Ghosh P; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bellary Road, Bangalore, Karnataka, India.; Bhattacharyya T

Subjects: Databases, Protein* ; Sequence Alignment*; Proteins/Proteins/Proteins/*chemistry

  • Source: Database : the journal of biological databases and curation [Database (Oxford)] 2019 Jan 01; Vol. 2019.Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463

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  • 1-10 ل  1,602 نتائج ل ""Databases, Protein""