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  • 1-10 ل  8,592 نتائج ل ""Models, Molecular""
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Academic Journal

The Historical Evolution and Significance of Multiple Sequence Alignment in Molecular Structure and Function Prediction.

  • Authors : Zhang C; NITFID, School of Statistics and Data Science, LPMC and KLMDASR, Nankai University, Tianjin 300071, China.; Wang Q

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Sequence Alignment*/Sequence Alignment*/Sequence Alignment*/methods; Artificial Intelligence

  • Source: Biomolecules [Biomolecules] 2024 Nov 29; Vol. 14 (12). Date of Electronic Publication: 2024 Nov 29.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

ARTEMIS: a method for topology-independent superposition of RNA 3D structures and structure-based sequence alignment.

  • Authors : Bohdan DR; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.; Bujnicki JM

Subjects: Nucleic Acid Conformation* ; Sequence Alignment*/Sequence Alignment*/Sequence Alignment*/methods ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Oct 14; Vol. 52 (18), pp. 10850-10861.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

RNAhugs web server for customized 3D RNA structure alignment.

  • Authors : Zurkowski M; Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology, Piotrowo 2, 60-965 Poznan, Poland.; Swiercz M

Subjects: Software* ; Nucleic Acid Conformation* ; Internet*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W348-W353.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Protein alignment based on higher order conditional random fields for template-based modeling.

Subjects: Models, Molecular*; Proteins/Proteins/Proteins/*chemistry ; Sequence Alignment/Sequence Alignment/Sequence Alignment/*methods

  • Source: PloS one [PLoS One] 2018 Jun 01; Vol. 13 (6), pp. e0197912. Date of Electronic Publication: 2018 Jun 01 (Print Publication: 2018).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Slipknot or Crystallographic Error: A Computational Analysis of the Plasmodium falciparum DHFR Structural Folds.

  • Authors : Tata RB; Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 6140, South Africa.; Alsulami AF

Subjects: Plasmodium falciparum/Plasmodium falciparum/Plasmodium falciparum/*enzymology ; Sequence Alignment/Sequence Alignment/Sequence Alignment/*methods ; Tetrahydrofolate Dehydrogenase/Tetrahydrofolate Dehydrogenase/Tetrahydrofolate Dehydrogenase/*chemistry

  • Source: International journal of molecular sciences [Int J Mol Sci] 2022 Jan 28; Vol. 23 (3). Date of Electronic Publication: 2022 Jan 28.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction.

  • Authors : Jain A; Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA.; Terashi G

Subjects: Deep Learning*; Proteins/Proteins/Proteins/*chemistry ; Sequence Alignment/Sequence Alignment/Sequence Alignment/*methods

  • Source: Scientific reports [Sci Rep] 2021 Apr 07; Vol. 11 (1), pp. 7574. Date of Electronic Publication: 2021 Apr 07.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Rosetta design with co-evolutionary information retains protein function.

  • Authors : Schmitz S; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.; Ertelt M

Subjects: Evolution, Molecular* ; Protein Conformation* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: PLoS computational biology [PLoS Comput Biol] 2021 Jan 19; Vol. 17 (1), pp. e1008568. Date of Electronic Publication: 2021 Jan 19 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

RNA structure prediction using positive and negative evolutionary information.

  • Authors : Rivas E; Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA.

Subjects: RNA*/RNA*/RNA*/chemistry ; RNA*/RNA*/RNA*/genetics ; RNA*/RNA*/RNA*/metabolism

  • Source: PLoS computational biology [PLoS Comput Biol] 2020 Oct 30; Vol. 16 (10), pp. e1008387. Date of Electronic Publication: 2020 Oct 30 (Print Publication: 2020).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

LocalSTAR3D: a local stack-based RNA 3D structural alignment tool.

  • Authors : Chen X; Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA.; Khan NS

Subjects: Base Pairing* ; Software*; RNA/RNA/RNA/*chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2020 Jul 27; Vol. 48 (13), pp. e77.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

MS3ALIGN: an efficient molecular surface aligner using the topology of surface curvature.

  • Authors : Shivashankar N; Department of Computer Science and Automation, Indian Institute of Science, Bangalore, 560012, India. .; Patil S

Subjects: Models, Molecular* ; Sequence Alignment*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2016 Jan 12; Vol. 17, pp. 26. Date of Electronic Publication: 2016 Jan 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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  • 1-10 ل  8,592 نتائج ل ""Models, Molecular""