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Academic Journal

Characterization of the AGR2-NPM3 axis uncovers the AGR2 involvement in PD-L1 regulation in colorectal cancer.

  • Authors : Martisova A; Research Centre for Applied Molecular Oncology, Masaryk Memorial Cancer Institute, Zluty Kopec 7, Brno, 65653, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno, 62500, Czech Republic.

Subjects: B7-H1 Antigen*/B7-H1 Antigen*/B7-H1 Antigen*/metabolism ; B7-H1 Antigen*/B7-H1 Antigen*/B7-H1 Antigen*/genetics ; Colorectal Neoplasms*/Colorectal Neoplasms*/Colorectal Neoplasms*/genetics

  • Source: Scientific reports [Sci Rep] 2024 Sep 20; Vol. 14 (1), pp. 21926. Date of Electronic Publication: 2024 Sep 20.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

MuToN Quantifies Binding Affinity Changes upon Protein Mutations by Geometric Deep Learning.

  • Authors : Li P; Department of Biomedical Engineering, School of Control Science and Engineering, Shandong University, Jinan, Shandong, 250061, China.; Liu ZP

Subjects: Software* ; Protein Conformation* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2024 Sep; Vol. 11 (35), pp. e2402918. Date of Electronic Publication: 2024 Jul 12.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

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Academic Journal

Prediction of mutation-induced protein stability changes based on the geometric representations learned by a self-supervised method.

  • Authors : Li SS; High Performance Computing Center, National Vaccine and Serum Institute (NVSI), Beijing, China.; National Engineering Center for New Vaccine Research, Beijing, China.

Subjects: Protein Stability* ; Mutation* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Aug 28; Vol. 25 (1), pp. 282. Date of Electronic Publication: 2024 Aug 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Impact of phylogeny on the inference of functional sectors from protein sequence data.

  • Authors : Dietler N; Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Subjects: Phylogeny* ; Proteins*/Proteins*/Proteins*/genetics ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Sep 23; Vol. 20 (9), pp. e1012091. Date of Electronic Publication: 2024 Sep 23 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A percolation theory analysis of continuous functional paths in protein sequence space affirms previous insights on the optimization of proteins for adaptability.

  • Authors : Miller BJ; Biologic Institute, Redmond, WA, United States of America.

Subjects: Proteins*/Proteins*/Proteins*/genetics ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism

  • Source: PloS one [PLoS One] 2024 Dec 05; Vol. 19 (12), pp. e0314929. Date of Electronic Publication: 2024 Dec 05 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Robust genetic codes enhance protein evolvability.

  • Authors : Rozhoňová H; Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Subjects: Genetic Code* ; Evolution, Molecular* ; Proteins*/Proteins*/Proteins*/genetics

  • Source: PLoS biology [PLoS Biol] 2024 May 16; Vol. 22 (5), pp. e3002594. Date of Electronic Publication: 2024 May 16 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Development of TALE-adenine base editors in plants.

  • Authors : Zhang D; Institute of Plant Genetics, Leibniz Universität Hannover, Hannover, Germany.; Boch J

Subjects: Cytosine Deaminase*/Cytosine Deaminase*/Cytosine Deaminase*/genetics ; Adenine* ; Cytidine Deaminase*

  • Source: Plant biotechnology journal [Plant Biotechnol J] 2024 May; Vol. 22 (5), pp. 1067-1077. Date of Electronic Publication: 2023 Nov 24.Publisher: Wiley on behalf of the Society for Experimental Biology, Association of Applied Biologists Country of Publication: England NLM ID: 101201889 Publication

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Academic Journal

Syndromic ciliopathy: a taiwanese single-center study.

  • Authors : Pan YW; Department of Pediatrics, College of Medicine, National Cheng Kung University Hospital, National Cheng Kung University, No. 138, Shengli Rd., North Dist, Tainan, 70403, Taiwan, Republic of China.; Ou TY

Subjects: Ciliopathies*/Ciliopathies*/Ciliopathies*/genetics ; Proteins* ; Kidney Diseases, Cystic*Agenesis of Cerebellar Vermis

  • Source: BMC medical genomics [BMC Med Genomics] 2024 Apr 26; Vol. 17 (1), pp. 106. Date of Electronic Publication: 2024 Apr 26.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794

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Academic Journal

Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements.

Subjects: Vocalization, Animal*/Vocalization, Animal*/Vocalization, Animal*/physiology ; Motor Cortex*/Motor Cortex*/Motor Cortex*/cytology ; Motor Cortex*/Motor Cortex*/Motor Cortex*/physiology

  • Source: Science (New York, N.Y.) [Science] 2024 Mar 29; Vol. 383 (6690), pp. eabn3263. Date of Electronic Publication: 2024 Mar 29.Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic

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Academic Journal

Identification of Genetic Variants for Risk Prediction and Early Diagnosis of Age-Related Macular Degeneration in the Taiwanese Population.

  • Authors : Huang YC; School of Chinese Medicine, China Medical University, Taichung 404328, Taiwan.; Genetic Center, Department of Medical Research, China Medical University Hospital, Taichung 404327, Taiwan.

Subjects: Proteins*/Proteins*/Proteins*/genetics ; Macular Degeneration*/Macular Degeneration*/Macular Degeneration*/diagnosis ; Macular Degeneration*/Macular Degeneration*/Macular Degeneration*/epidemiology

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Mar 12; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 12.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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