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Academic Journal

The modular organization of domain structures: insights into protein-protein binding.

  • Authors : del Sol A; Bioinformatics Research Unit, Research and Development Division, Fujirebio, Tokyo, Japan. ; Carbonell P

Subjects: Models, Chemical* ; Protein Binding* ; Protein Structure, Tertiary*

  • Source: PLoS computational biology [PLoS Comput Biol] 2007 Dec; Vol. 3 (12), pp. e239.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A novel combined RNA-protein interaction analysis distinguishes HIV-1 Gag protein binding sites from structural change in the viral RNA leader.

  • Authors : Kenyon JC; Box 157, Cambridge University Dept. of Medicine, Addenbrooke's Hospital, Hills Rd, Cambridge CB2 0QQ.; Prestwood LJ

Subjects: Nucleic Acid Conformation* ; Protein Structure, Tertiary*; RNA, Viral/RNA, Viral/RNA, Viral/*chemistry

  • Source: Scientific reports [Sci Rep] 2015 Oct 09; Vol. 5, pp. 14369. Date of Electronic Publication: 2015 Oct 09.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Membrane interaction of bound ligands contributes to the negative binding cooperativity of the EGF receptor.

  • Authors : Arkhipov A; D. E. Shaw Research, New York, New York, United States of America.; Shan Y

Subjects: Protein Binding* ; Protein Structure, Tertiary*; Cell Membrane/Cell Membrane/Cell Membrane/*chemistry

  • Source: PLoS computational biology [PLoS Comput Biol] 2014 Jul 24; Vol. 10 (7), pp. e1003742. Date of Electronic Publication: 2014 Jul 24 (Print Publication: 2014).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Sequence and Structure Properties Uncover the Natural Classification of Protein Complexes Formed by Intrinsically Disordered Proteins via Mutual Synergistic Folding.

  • Authors : Mészáros B; MTA-ELTE Momentum Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Pázmány Péter stny 1/c, H-1117 Budapest, Hungary. .; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Meyerhofstraße 1, 69117 Heidelberg, Germany. .

Subjects: Protein Folding* ; Protein Structure, Secondary* ; Protein Structure, Tertiary*

  • Source: International journal of molecular sciences [Int J Mol Sci] 2019 Nov 01; Vol. 20 (21). Date of Electronic Publication: 2019 Nov 01.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

HMG-box domain stimulation of RAG1/2 cleavage activity is metal ion dependent.

  • Authors : Kriatchko AN; Department of Medical Microbiology and Immunology, Creighton University Medical Center, 2500 California Plaza, Omaha, NE, USA. ; Bergeron S

Subjects: Protein Binding* ; Protein Structure, Tertiary*; Cations, Divalent/Cations, Divalent/Cations, Divalent/*metabolism

  • Source: BMC molecular biology [BMC Mol Biol] 2008 Apr 01; Vol. 9, pp. 32. Date of Electronic Publication: 2008 Apr 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100966983 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2199

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Academic Journal

Protemot: prediction of protein binding sites with automatically extracted geometrical templates.

  • Authors : Chang DT; Department of Computer Science and Information Engineering, National Taiwan University, Taipei, 106, Taiwan, Republic of China. ; Weng YZ

Subjects: Protein Structure, Tertiary* ; Software* ; Structural Homology, Protein*

  • Source: Nucleic acids research [Nucleic Acids Res] 2006 Jul 01; Vol. 34 (Web Server issue), pp. W303-9.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Activity and structure of EcoKMcrA.

  • Authors : Czapinska H; International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, Poland.; Kowalska M

Subjects: Protein Structure, Tertiary*; DNA Restriction Enzymes/DNA Restriction Enzymes/DNA Restriction Enzymes/*chemistry ; DNA-Binding Proteins/DNA-Binding Proteins/DNA-Binding Proteins/*chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2018 Oct 12; Vol. 46 (18), pp. 9829-9841.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

X-ray structure of full-length human RuvB-Like 2 - mechanistic insights into coupling between ATP binding and mechanical action.

  • Authors : Silva STN; Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157, Oeiras, Portugal.; iBET, Instituto de Biologia Experimental e Tecnológica, Apartado 12, 2780-901, Oeiras, Portugal.

Subjects: Protein Structure, Tertiary*; ATPases Associated with Diverse Cellular Activities/ATPases Associated with Diverse Cellular Activities/ATPases Associated with Diverse Cellular Activities/*chemistry ; Adenosine Triphosphate/Adenosine Triphosphate/Adenosine Triphosphate/*chemistry

  • Source: Scientific reports [Sci Rep] 2018 Sep 13; Vol. 8 (1), pp. 13726. Date of Electronic Publication: 2018 Sep 13.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

The PB1 domain and the PC motif-containing region are structurally similar protein binding modules.

  • Authors : Yoshinaga S; Department of Structural Biology, Graduate School of Pharmaceutical Sciences, Hokkaido University, N12, W6, Kita-ku, Sapporo 060-0812, Japan.; Kohjima M

Subjects: Amino Acid Motifs* ; Guanine Nucleotide Exchange Factors* ; Protein Structure, Tertiary*

  • Source: The EMBO journal [EMBO J] 2003 Oct 01; Vol. 22 (19), pp. 4888-97.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8208664 Publication Model: Print Cited Medium: Print ISSN: 0261-4189

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