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  • 1-10 ل  41,868 نتائج ل ""Models, Molecular""

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Subject : protein conformation
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Academic Journal

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank.

  • Authors : Burley SK; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

Subjects: Databases, Protein* ; Models, Molecular* ; Protein Conformation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D564-D574.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

AI-Driven Deep Learning Techniques in Protein Structure Prediction.

  • Authors : Chen L; College of Computing and Software Engineering, Kennesaw State University, Marietta, GA 30060, USA.; Li Q

Subjects: Deep Learning* ; Proteins*/Proteins*/Proteins*/chemistry ; Protein Conformation*

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Aug 01; Vol. 25 (15). Date of Electronic Publication: 2024 Aug 01.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models.

  • Authors : Rubach P; Warsaw School of Economics, Al. Niepodleglosci 162, 02-554 Warsaw, Poland.; Sikora M

Subjects: Internet* ; Software* ; Databases, Protein*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W187-W193.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

  • Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

LightRoseTTA: High-Efficient and Accurate Protein Structure Prediction Using a Light-Weight Deep Graph Model.

  • Authors : Wang X; School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China.; Zhang T

Subjects: Protein Conformation* ; Proteins*/Proteins*/Proteins*/chemistry ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2025 May; Vol. 12 (19), pp. e2309051. Date of Electronic Publication: 2025 Mar 25.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

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Academic Journal

Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling.

  • Authors : Woo H; Department of Chemistry, Seoul National University, Seoul, Republic of Korea.; Kim Y

Subjects: Deep Learning* ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Protein Conformation*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Jun 24; Vol. 20 (6), pp. e1012239. Date of Electronic Publication: 2024 Jun 24 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

AFsample2 predicts multiple conformations and ensembles with AlphaFold2.

  • Authors : Kalakoti Y; Division of Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.; Wallner B

Subjects: Protein Conformation* ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: Communications biology [Commun Biol] 2025 Mar 05; Vol. 8 (1), pp. 373. Date of Electronic Publication: 2025 Mar 05.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

AlphaFold2-Based Characterization of Apo and Holo Protein Structures and Conformational Ensembles Using Randomized Alanine Sequence Scanning Adaptation: Capturing Shared Signature Dynamics and Ligand-Induced Conformational Changes.

  • Authors : Raisinghani N; Keck Center for Science and Engineering, Schmid College of Science and Technology, Chapman University, Orange, CA 92866, USA.; Parikh V

Subjects: Protein Conformation*; Ligands ; Alanine/Alanine/Alanine/chemistry

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Dec 02; Vol. 25 (23). Date of Electronic Publication: 2024 Dec 02.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Systematic analysis of the relationship between fold-dependent flexibility and artificial intelligence protein structure prediction.

  • Authors : Haque N; Computational Structural Genomics Unit, Linda T. and John A. Mellowes Center for Genomic Sciences and Precision Medicine, Medical College of Wisconsin, Milwaukee, WI, United States of America.; Wagenknecht JB

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Protein Folding* ; Protein Conformation*

  • Source: PloS one [PLoS One] 2024 Nov 26; Vol. 19 (11), pp. e0313308. Date of Electronic Publication: 2024 Nov 26 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Conformational Flexibility in Capsids Encoded by the Caliciviridae .

  • Authors : Lewis CB; MRC-University of Glasgow Centre for Virus Research, Garscube Campus, 464 Bearsden Road, Glasgow G61 1QH, UK.; Sherry L

Subjects: Capsid Proteins*/Capsid Proteins*/Capsid Proteins*/chemistry ; Capsid Proteins*/Capsid Proteins*/Capsid Proteins*/metabolism ; Capsid Proteins*/Capsid Proteins*/Capsid Proteins*/genetics

  • Source: Viruses [Viruses] 2024 Nov 26; Vol. 16 (12). Date of Electronic Publication: 2024 Nov 26.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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  • 1-10 ل  41,868 نتائج ل ""Models, Molecular""