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Academic Journal

Molecular Determinants for Guanine Binding in GTP-Binding Proteins: A Data Mining and Quantum Chemical Study.

  • Authors : Bhatta P; Department of Chemistry and Biochemistry, University of Toledo, Toledo, OH 43606, USA.; Hu X

Subjects: Guanine*/Guanine*/Guanine*/metabolism ; Guanine*/Guanine*/Guanine*/chemistry ; Hydrogen Bonding*

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Nov 20; Vol. 25 (22). Date of Electronic Publication: 2024 Nov 20.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Comparison of retinol binding protein 1 with cone specific G-protein as putative effector molecules in cryptochrome signalling.

  • Authors : Yee C; Division of Biochemistry, Department of Neuroscience, Carl von Ossietzky Universität Oldenburg, 26111, Oldenburg, Germany.; Bartölke R

Subjects: Cryptochromes*/Cryptochromes*/Cryptochromes*/metabolism ; Cryptochromes*/Cryptochromes*/Cryptochromes*/genetics ; Signal Transduction*

  • Source: Scientific reports [Sci Rep] 2024 Nov 16; Vol. 14 (1), pp. 28326. Date of Electronic Publication: 2024 Nov 16.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

The transition state for coupled folding and binding of a disordered DNA binding domain resembles the unbound state.

  • Authors : Kuravsky M; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.; Kelly C

Subjects: Protein Folding* ; Protein Binding* ; DNA*/DNA*/DNA*/chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Oct 28; Vol. 52 (19), pp. 11822-11837.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Structure-based discovery of a new type of scaffold compound as binding competitors for protein-bound Uremic Toxins.

  • Authors : Wang P; Institute of Medical Artificial Intelligence, Binzhou Medical University, Yantai, 264003, P.R., China.; The Pharmacy School of Binzhou Medical University, Yantai, 264003, P.R., China.

Subjects: Molecular Docking Simulation* ; Protein Binding* ; Uremic Toxins*/Uremic Toxins*/Uremic Toxins*/metabolism

  • Source: Scientific reports [Sci Rep] 2024 Nov 15; Vol. 14 (1), pp. 28152. Date of Electronic Publication: 2024 Nov 15.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Phylogenomic instructed target analysis reveals ELAV complex binding to multiple optimally spaced U-rich motifs.

  • Authors : McQuarrie DWJ; School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.; Birmingham Centre for Genome Biology, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.

Subjects: Nucleotide Motifs* ; Protein Binding*; Binding Sites

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Nov 11; Vol. 52 (20), pp. 12712-12726.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Receptor binding and structural basis of raccoon dog ACE2 binding to SARS-CoV-2 prototype and its variants.

  • Authors : Luo C; College of Veterinary Medicine, Shanxi Agricultural University, Jinzhong, China.; CAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences (CAS), Beijing, China.

Subjects: Angiotensin-Converting Enzyme 2*/Angiotensin-Converting Enzyme 2*/Angiotensin-Converting Enzyme 2*/metabolism ; Angiotensin-Converting Enzyme 2*/Angiotensin-Converting Enzyme 2*/Angiotensin-Converting Enzyme 2*/chemistry ; SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/metabolism SARS-CoV-2 variants

  • Source: PLoS pathogens [PLoS Pathog] 2024 Dec 05; Vol. 20 (12), pp. e1012713. Date of Electronic Publication: 2024 Dec 05 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Role of Non-Binding T63 Alteration in IL-18 Binding.

  • Authors : Peeyatu C; Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand.; Prompat N

Subjects: Interleukin-18*/Interleukin-18*/Interleukin-18*/metabolism ; Interleukin-18*/Interleukin-18*/Interleukin-18*/chemistry ; Protein Binding*

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Dec 03; Vol. 25 (23). Date of Electronic Publication: 2024 Dec 03.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Incorporating Water Molecules into Highly Accurate Binding Affinity Prediction for Proteins and Ligands.

  • Authors : Zhang D; School of Computer Science and Engineering, Central South University, Changsha 410000, China.; Meng Q

Subjects: Water*/Water*/Water*/chemistry ; Water*/Water*/Water*/metabolism ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Nov 26; Vol. 25 (23). Date of Electronic Publication: 2024 Nov 26.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Massively parallel binding assay (MPBA) reveals limited transcription factor binding cooperativity, challenging models of specificity.

  • Authors : Jana Lang T; Department of Molecular Genetics, Weizmann Institute of Science, 234 Herzl st, Rehovot 7610001, Israel.; Brodsky S

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Protein Binding* ; Saccharomyces cerevisiae*/Saccharomyces cerevisiae*/Saccharomyces cerevisiae*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Nov 11; Vol. 52 (20), pp. 12227-12243.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Identification of an RNA-binding perturbing characteristic for thiopurine drugs and their derivatives to disrupt CELF1-RNA interaction.

  • Authors : Tan Y; State Key Laboratory of Pharmaceutical Biotechnology, Drum Tower Hospital Affiliated to Medical School, School of Life Sciences, Nanjing University, Nanjing 210023, China.; Zhao Z

Subjects: CELF1 Protein*/CELF1 Protein*/CELF1 Protein*/metabolism ; Mercaptopurine*/Mercaptopurine*/Mercaptopurine*/pharmacology ; Mercaptopurine*/Mercaptopurine*/Mercaptopurine*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Oct 14; Vol. 52 (18), pp. 10810-10822.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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