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Academic Journal

Spatial-temporal transmission dynamics of HIV-1 CRF01_AE in Indonesia.

  • Authors : Khairunisa SQ; Faculty of Medicine, Universitas Airlangga, Surabaya, Indonesia.; Indonesian-Japan Collaborative Research Center for Emerging and Re-Emerging Infectious Diseases, Institute of Tropical Disease, Universitas Airlangga, Surabaya, Indonesia.

Subjects: HIV-1*/HIV-1*/HIV-1*/genetics ; HIV-1*/HIV-1*/HIV-1*/classification ; HIV Infections*/HIV Infections*/HIV Infections*/transmission

  • Source: Scientific reports [Sci Rep] 2024 May 10; Vol. 14 (1), pp. 9917. Date of Electronic Publication: 2024 May 10.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Fusang: a framework for phylogenetic tree inference via deep learning.

  • Authors : Wang Z; Chinese Institute for Brain Research, Beijing 102206, China.; Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.

Subjects: Deep Learning* ; Phylogeny*; Algorithms

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 10909-10923.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Identifying the Best Approximating Model in Bayesian Phylogenetics: Bayes Factors, Cross-Validation or wAIC?

  • Authors : Lartillot N; Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, UMR5558, Villeurbanne, France.

Subjects: Phylogeny*; Bayes Theorem ; Computer Simulation

  • Source: Systematic biology [Syst Biol] 2023 Jun 17; Vol. 72 (3), pp. 616-638.Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

New Phylogenetic Markov Models for Inapplicable Morphological Characters.

  • Authors : Tarasov S; Finnish Museum of Natural History, Pohjoinen Rautatiekatu 13, FI-00014 Helsinki, Finland.

Subjects: Phylogeny*; Bayes Theorem

  • Source: Systematic biology [Syst Biol] 2023 Jun 17; Vol. 72 (3), pp. 681-693.Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

LoRaD: Marginal likelihood estimation with haste (but no waste).

  • Authors : Wang YB; School of Mathematical and Statistical Sciences, Clemson University, Clemson, SC 29634, USA.; Milkey A

Subjects: Phylogeny*; Likelihood Functions ; Bayes Theorem

  • Source: Systematic biology [Syst Biol] 2023 Jun 17; Vol. 72 (3), pp. 639-648.Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Fidelity of hyperbolic space for Bayesian phylogenetic inference.

  • Authors : Macaulay M; University of Technology Sydney, Australian Institute for Microbiology & Infection, Sydney, Australia.; Darling A

Subjects: Phylogeny*; Bayes Theorem ; Algorithms

  • Source: PLoS computational biology [PLoS Comput Biol] 2023 Apr 26; Vol. 19 (4), pp. e1011084. Date of Electronic Publication: 2023 Apr 26 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Plastome phylogenomic analysis reveals evolutionary divergences of Polypodiales suborder Dennstaedtiineae.

  • Authors : Lu JM; Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, 650201, China. .; Du XY

Subjects: Phylogeny*; Bayes Theorem ; Ferns/Ferns/Ferns/classification

  • Source: BMC plant biology [BMC Plant Biol] 2022 Nov 02; Vol. 22 (1), pp. 511. Date of Electronic Publication: 2022 Nov 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229

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Academic Journal

Bayesian Analyses of Comparative Data with the Ornstein-Uhlenbeck Model: Potential Pitfalls.

  • Authors : Cornuault J; Real Jardín Botánico (RJB), CSIC, Plaza de Murillo, 28014 Madrid, Spain.; ISEM, Université de Montpellier, CNRS, IRD, EPHE, Place Eugène Bataillon, 34095 Montpellier, France.

Subjects: Phylogeny*; Bayes Theorem ; Phenotype

  • Source: Systematic biology [Syst Biol] 2022 Oct 12; Vol. 71 (6), pp. 1524-1540.Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

An integrative phylogenetic approach for inferring relationships of fossil gobioids (Teleostei: Gobiiformes).

  • Authors : Gierl C; Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.; Dohrmann M

Subjects: Fishes*/Fishes*/Fishes*/anatomy & histology ; Fishes*/Fishes*/Fishes*/classification ; Fossils*

  • Source: PloS one [PLoS One] 2022 Jul 08; Vol. 17 (7), pp. e0271121. Date of Electronic Publication: 2022 Jul 08 (Print Publication: 2022).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A test of Generalized Bayesian dating: A new linguistic dating method.

  • Authors : Rama T; Department of Linguistics, University of North Texas, Denton, Texas, United States of America.; Wichmann S

Subjects: Bayes Theorem* ; Phylogeny*; Language/Language/Language/*history

  • Source: PloS one [PLoS One] 2020 Aug 12; Vol. 15 (8), pp. e0236522. Date of Electronic Publication: 2020 Aug 12 (Print Publication: 2020).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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