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Academic Journal

BML: a versatile web server for bipartite motif discovery.

  • Authors : Vahed M; Department of Pathology & Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles (UCLA), California, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48105, USA.

Subjects: Nucleotide Motifs* ; Software* ; Web Browser*

  • Source: Briefings in bioinformatics [Brief Bioinform] 2022 Jan 17; Vol. 23 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

MD-SVM: a novel SVM-based algorithm for the motif discovery of transcription factor binding sites.

  • Authors : Hu J; School of Computer Science, Northwestern Polytechnical University, West Youyi Road 127, Xi'an, 710072, China. .; Centre of Multidisciplinary Convergence Computing, School of Computer Science, Northwestern Polytechnical University, 1 Dong Xiang Road, Xi'an, 710129, China. .

Subjects: Algorithms* ; Nucleotide Motifs* ; Support Vector Machine*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 May 01; Vol. 20 (Suppl 7), pp. 200. Date of Electronic Publication: 2019 May 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture.

  • Authors : Peng S; College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China. .; School of Computer Science, National University of Defense Technology, Changsha, 410073, China. .

Subjects: Nucleotide Motifs* ; Promoter Regions, Genetic* ; Regulatory Elements, Transcriptional*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Aug 13; Vol. 19 (Suppl 9), pp. 282. Date of Electronic Publication: 2018 Aug 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

The BaMM web server for de-novo motif discovery and regulatory sequence analysis.

  • Authors : Kiesel A; Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.; Roth C

Subjects: Nucleotide Motifs* ; Regulatory Sequences, Nucleic Acid* ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2018 Jul 02; Vol. 46 (W1), pp. W215-W220.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

  • Authors : Saad C; Univ. Lille, CNRS, Inria, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, Lille, France. .; Univ. Lille, Inserm, Lille University Hospital, UMR-S 1172 - JPARC - Centre de Recherche Jean-Pierre AUBERT, Lille, F-59000, France. .

Subjects: Nucleotide Motifs* ; Software*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Jun 11; Vol. 19 (1), pp. 223. Date of Electronic Publication: 2018 Jun 11.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

A systematic approach to RNA-associated motif discovery.

  • Authors : Gao T; Systems Biology and Biomedical Informatics (SBBI) Laboratory, Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.; Shu J

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Exosomes/Exosomes/Exosomes/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2018 Feb 14; Vol. 19 (1), pp. 146. Date of Electronic Publication: 2018 Feb 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

An Entropy-Based Position Projection Algorithm for Motif Discovery.

  • Authors : Zhang Y; Department of Automation, School of Electronics and Control Engineering, Chang'An University, Xi'an 710064, China.; Wang P

Subjects: Algorithms* ; Entropy* ; Position-Specific Scoring Matrices*

  • Source: BioMed research international [Biomed Res Int] 2016; Vol. 2016, pp. 9127474. Date of Electronic Publication: 2016 Nov 02.Publisher: Hindawi Pub. Co Country of Publication: United States NLM ID: 101600173 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

RNA motif discovery: a computational overview.

  • Authors : Achar A; Department of Computer and Information Science, Norwegian University of Science and Technology, Trondheim, Norway.; Sætrom P

Subjects: Computational Biology* ; Nucleotide Motifs* ; Protein Structure, Secondary*

  • Source: Biology direct [Biol Direct] 2015 Oct 09; Vol. 10, pp. 61. Date of Electronic Publication: 2015 Oct 09.Publisher: BioMed Central Country of Publication: England NLM ID: 101258412 Publication Model: Electronic Cited Medium: Internet ISSN: 1745-6150

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Academic Journal

De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes.

  • Authors : Zolotarov Y; Department of Plant Science, Macdonald Campus, McGill University, 21111 Lakeshore Road, Sainte-Anne-de-Bellevue, QC, H9X 3V9, Canada.; Strömvik M

Subjects: Gene Expression Regulation, Plant*/Gene Expression Regulation, Plant*/Gene Expression Regulation, Plant*/drug effects ; Nucleotide Motifs* ; Promoter Regions, Genetic*

  • Source: PloS one [PLoS One] 2015 Jun 26; Vol. 10 (6), pp. e0129016. Date of Electronic Publication: 2015 Jun 26 (Print Publication: 2015).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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