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Subject : molecular biology

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Academic Journal

Protocol to identify DNA-binding proteins recognizing nucleotide repeat dsDNAs

Authors : Zhiyuan Huang; Yixin Zhou; Yang Liu

Subjects: Cell Biology; Cell culture; Cell-based Assays

Source: STAR Protocols, Vol 5, Iss 2, Pp 103013- (2024)

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Single-Stranded DNA Binding Proteins and Their Identification Using Machine Learning-Based Approaches

Authors : Jun-Tao Guo; Fareeha Malik

Subjects: DNA-Binding Proteins; Machine Learning; DNA, Single-Stranded

Source: Biomolecules. 12(9)

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A Novel Family of Winged-Helix Single-Stranded DNA-Binding Proteins from Archaea

Authors : Can Huang; Xuehui Liu; Yuanyuan Chen

Subjects: Organic Chemistry; DNA, Single-Stranded; winged-helix protein

Source: International Journal of Molecular Sciences; Volume 23; Issue 7; Pages: 3455

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Small Prokaryotic DNA-Binding Proteins Protect Genome Integrity throughout the Life Cycle

Authors : Katja Molan; Darja Žgur Bertok

Subjects: DNA Replication; Life Cycle Stages; small acid soluble proteins

Source: International journal of molecular sciences, vol. 23, no. 7, 4008, 2022.

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Analysis and prediction of single-stranded and double-stranded DNA binding proteins based on protein sequences

Authors : Jinling Shi; Tianhe Xu; Wei Wang

Subjects: 0301 basic medicine; Support Vector Machine; SSBs (Single-stranded DNA-binding proteins)

Source: BMC Bioinformatics, Vol 18, Iss 1, Pp 1-10 (2017)BMC Bioinformatics

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Effects of Global and Specific DNA-Binding Proteins on Transcriptional Regulation of the E. coli bgl Operon

Authors : Dennis Tran; Zhongge Zhang; Katie Jing Kay Lam

Subjects: Inorganic Chemistry; Organic Chemistry; General Medicine

Source: International Journal of Molecular Sciences; Volume 23; Issue 18; Pages: 10343

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DNA binding proteins explore multiple local configurations during docking via rapid rebinding

Authors : M.W. Docter; Mahipal Ganji; Elio A. Abbondanzieri

Subjects: 0301 basic medicine; HMG-box; Macromolecular Substances

Source: Nucleic acids research, 44(17)Nucleic Acids Research

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The increasing diversity of functions attributed to the SAFB family of RNA-/DNA-binding proteins

Authors : Youn-Bok Lee; Caroline A Rivers; Jalilah Idris

Subjects: 0301 basic medicine; DNA Repair; DNA repair

Source: Norman, M, Rivers, C, Lee, Y B, Idris, J & Uney, J 2016, ' The increasing diversity of functions attributed to the SAFB family of RNA/DNA

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On the prediction of DNA-binding proteins only from primary sequences: A deep learning approach

Authors : Yu-Hui Qu; Hua Yu; Jia-Hui Xu

Subjects: 0301 basic medicine; Computer science; Arabidopsis

Source: PLoS ONEPLoS ONE, Vol 12, Iss 12, p e0188129 (2017)

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PSFM-DBT: Identifying DNA-Binding Proteins by Combing Position Specific Frequency Matrix and Distance-Bigram Transformation

Authors : Bin Liu; Jun Zhang

Subjects: 0301 basic medicine; Models, Molecular; Support Vector Machine

Source: International Journal of Molecular Sciences, Vol 18, Iss 9, p 1856 (2017)International Journal of Molecular SciencesInternational Journal of Molecular Sciences; Volume 18; Issue 9; Pages:

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