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Academic Journal

An extension of the Walsh-Hadamard transform to calculate and model epistasis in genetic landscapes of arbitrary shape and complexity.

  • Authors : Faure AJ; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.; Lehner B

Subjects: Epistasis, Genetic*/Epistasis, Genetic*/Epistasis, Genetic*/genetics ; Models, Genetic*; Computational Biology/Computational Biology/Computational Biology/methods

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 May 28; Vol. 20 (5), pp. e1012132. Date of Electronic Publication: 2024 May 28 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Synergistic epistasis among cancer drivers can rescue early tumors from the accumulation of deleterious passengers.

  • Authors : Alejandre C; Centro de Astrobiología (CAB) CSIC-INTA, Torrejón de Ardoz, Madrid, Spain.; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), Madrid, Spain.

Subjects: Epistasis, Genetic*/Epistasis, Genetic*/Epistasis, Genetic*/genetics ; Neoplasms*/Neoplasms*/Neoplasms*/genetics ; Computer Simulation*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Apr 30; Vol. 20 (4), pp. e1012081. Date of Electronic Publication: 2024 Apr 30 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

SEEI: spherical evolution with feedback mechanism for identifying epistatic interactions.

  • Authors : Tang DY; Department of Computer Science, School of Mathematics and Informatics, School of Software Engineering, South China Agricultural University, Guangzhou, 510642, PR China. .; School of Medical Information and Engineering, Guangdong Pharmaceutical University, Guangzhou, 510006, PR China. .

Subjects: Epistasis, Genetic* ; Algorithms* ; Polymorphism, Single Nucleotide*

  • Source: BMC genomics [BMC Genomics] 2024 May 13; Vol. 25 (1), pp. 462. Date of Electronic Publication: 2024 May 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Dimensionality reduction approach for many-objective epistasis analysis.

  • Authors : Yang CH; Department of Information Management at the Tainan University of Technology, and at the Department of Electronic Engineering at National Kaohsiung of Science and Technology, Taiwan.; Biomedical Engineering, Kaohsiung Medical University, Taiwan.

Subjects: Epistasis, Genetic* ; Models, Genetic*; Algorithms

  • Source: Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Significance of linkage disequilibrium and epistasis on genetic variances in noninbred and inbred populations.

  • Authors : Viana JMS; Department of General Biology, Federal University of Viçosa, Viçosa, MG, 36570-900, Brazil. .; Garcia AAF

Subjects: Epistasis, Genetic* ; Models, Genetic*; Gene Frequency

  • Source: BMC genomics [BMC Genomics] 2022 Apr 09; Vol. 23 (1), pp. 286. Date of Electronic Publication: 2022 Apr 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.

Subjects: Epistasis, Genetic* ; Models, Genetic*; Penetrance

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 Apr 02; Vol. 23 (1), pp. 117. Date of Electronic Publication: 2022 Apr 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Evaluating the detection ability of a range of epistasis detection methods on simulated data for pure and impure epistatic models.

  • Authors : Russ D; Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham, United Kingdom.; Institute of Translational Medicine, University of Birmingham, Birmingham, United Kingdom.

Subjects: Epistasis, Genetic* ; Genetic Loci* ; Models, Genetic*

  • Source: PloS one [PLoS One] 2022 Feb 18; Vol. 17 (2), pp. e0263390. Date of Electronic Publication: 2022 Feb 18 (Print Publication: 2022).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Maximal Information Coefficient-Based Testing to Identify Epistasis in Case-Control Association Studies.

  • Authors : Guo Y; School of Electronic and Communication Engineering, Shenzhen Polytechnic, 7098 Liuxian Street, Shenzhen 518000, China.; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, No. 4 Block 2 North Jianshe Road, Chengdu 610054, China.

Subjects: Epistasis, Genetic* ; Models, Genetic*; Algorithms

  • Source: Computational and mathematical methods in medicine [Comput Math Methods Med] 2022 Feb 15; Vol. 2022, pp. 7843990. Date of Electronic Publication: 2022 Feb 15 (Print Publication:Publisher: Hindawi Country of Publication: United States NLM ID: 101277751 Publication Model: eCollection Cited Medium: Internet ISSN: 1748-6718

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Academic Journal

Accounting for epistasis improves genomic prediction of phenotypes with univariate and bivariate models across environments.

  • Authors : Vojgani E; Center for Integrated Breeding Research, Animal Breeding and Genetics Group, University of Goettingen, Goettingen, Germany. .; Pook T

Subjects: Environment* ; Epistasis, Genetic* ; Models, Genetic*

  • Source: TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [Theor Appl Genet] 2021 Sep; Vol. 134 (9), pp. 2913-2930. Date of Electronic Publication: 2021 Jun 11.Publisher: Springer Country of Publication: Germany NLM ID: 0145600 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-2242

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Academic Journal

An evolution-based high-fidelity method of epistasis measurement: Theory and application to influenza.

  • Authors : Pedruzzi G; Sorbonne Université, Institute de Biologie Paris-Seine, Laboratoire de Biologie Computationelle et Quantitative LCQB, Paris, France.; Rouzine IM

Subjects: Algorithms* ; Epistasis, Genetic* ; Models, Genetic*

  • Source: PLoS pathogens [PLoS Pathog] 2021 Jun 21; Vol. 17 (6), pp. e1009669. Date of Electronic Publication: 2021 Jun 21 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet

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