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Academic Journal

ASV vs OTUs clustering: Effects on alpha, beta, and gamma diversities in microbiome metabarcoding studies.

  • Authors : Fasolo A; Department of Agronomy, Animals, Food, Natural Resources and Environment DAFNAE, University of Padova, Padua, Italy.; Deb S

Subjects: Microbiota*/Microbiota*/Microbiota*/genetics ; RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/genetics; Cluster Analysis

  • Source: PloS one [PLoS One] 2024 Oct 03; Vol. 19 (10), pp. e0309065. Date of Electronic Publication: 2024 Oct 03 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

CuReSim-LoRM: A Tool to Simulate Metabarcoding Long Reads.

  • Authors : Mesloub Y; Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US 41-UAR 2014-PLBS, F-59000 Lille, France.; Beury D

Subjects: Microbiota* ; Nanopores*; Benchmarking

  • Source: International journal of molecular sciences [Int J Mol Sci] 2023 Sep 12; Vol. 24 (18). Date of Electronic Publication: 2023 Sep 12.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Skin and gut microbiomes of tadpoles vary differently with host and water environment: a short-term experiment using 16S metabarcoding.

  • Authors : Santos B; CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, 4485-661, Vairão, Portugal. .; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661, Vairão, Portugal. .

Subjects: Gastrointestinal Microbiome* ; Microbiota*; Animals

  • Source: Scientific reports [Sci Rep] 2023 Sep 28; Vol. 13 (1), pp. 16321. Date of Electronic Publication: 2023 Sep 28.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Energy-saving pretreatments affect pelagic Sargassum composition and DNA metabarcoding reveals the microbial community involved in methane yield.

Subjects: Sargassum* ; Microbiota*/Microbiota*/Microbiota*/genetics; Animals

  • Source: PloS one [PLoS One] 2023 Aug 17; Vol. 18 (8), pp. e0289972. Date of Electronic Publication: 2023 Aug 17 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding.

  • Authors : Mitsi K; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Passeig Marítim de La Barceloneta, 37-49, 08033, Barcelona, Spain. .; Richter DJ

Subjects: Stramenopiles* ; Microbiota*; Lakes

  • Source: Scientific reports [Sci Rep] 2023 Feb 22; Vol. 13 (1), pp. 3119. Date of Electronic Publication: 2023 Feb 22.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Study of cattle microbiota in different regions of Kazakhstan using 16S metabarcoding analysis.

  • Authors : Daugaliyeva A; Kazakh Research Institute for Livestock and Fodder Production, St. Zhandosova 51, Almaty, Kazakhstan.; Daugaliyeva S

Subjects: Euryarchaeota* ; Greenhouse Gases* ; Microbiota*

  • Source: Scientific reports [Sci Rep] 2022 Sep 30; Vol. 12 (1), pp. 16410. Date of Electronic Publication: 2022 Sep 30.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Oral ecological environment modifications by hard-cheese: from pH to microbiome: a prospective cohort study based on 16S rRNA metabarcoding approach.

  • Authors : Lorenzini EC; Department of Biomedical Science for Health, University of Milan, 20100, Milan, Italy.; Institute of Agricultural Biology and Biotechnology, Consiglio Nazionale delle Ricerche (CNR), Via Bassini 15, 20133, Milan, Italy.

Subjects: Cheese*/Cheese*/Cheese*/microbiology ; Dental Caries* ; Microbiota*/Microbiota*/Microbiota*/genetics

  • Source: Journal of translational medicine [J Transl Med] 2022 Jul 09; Vol. 20 (1), pp. 312. Date of Electronic Publication: 2022 Jul 09.Publisher: BioMed Central Country of Publication: England NLM ID: 101190741 Publication Model: Electronic Cited Medium: Internet ISSN: 1479-5876

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Academic Journal

DNA Metabarcoding from Microbial Communities Recovered from Stream and Its Potential for Bioremediation Processes.

  • Authors : Ottoni JR; Laboratory of Environmental Biotechnology, Federal University of Latin-American Integration - UNILA, Av. Tarquínio Joslin Dos Santos, 1000-Jd Universitário, G11, Foz do Iguaçu, Paraná, 85870-901, Brazil.; Dos Santos Grignet R

Subjects: Microbiota* ; Rivers*; Bacteria/Bacteria/Bacteria/genetics

  • Source: Current microbiology [Curr Microbiol] 2022 Jan 20; Vol. 79 (2), pp. 70. Date of Electronic Publication: 2022 Jan 20.Publisher: Springer International Country of Publication: United States NLM ID: 7808448 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

DNA metabarcoding of the leachate microbiota from sanitary landfill: potential for bioremediation process.

  • Authors : Passarini MRZ; Institute Latin American of Nature and Life Sciences (ILACNV), Interdisciplinary Center of Life Sciences (CICV), Federal University of Latin American Integration (UNILA), 1000 Tarquínio Joslin dos Santos Av., Jardim Universitário, Foz do Iguaçu, PR, 85870-901, Brazil.; Moreira JVF

Subjects: Microbiota*/Microbiota*/Microbiota*/genetics ; Water Pollutants, Chemical*/Water Pollutants, Chemical*/Water Pollutants, Chemical*/analysis; Biodegradation, Environmental

  • Source: Archives of microbiology [Arch Microbiol] 2021 Oct; Vol. 203 (8), pp. 4847-4858. Date of Electronic Publication: 2021 Jul 06.Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 0410427 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Dadaist2: A Toolkit to Automate and Simplify Statistical Analysis and Plotting of Metabarcoding Experiments.

  • Authors : Ansorge R; Gut Microbes and Health Programme, Quadram Institute Bioscience, Norwich NR4 7UQ, UK.; Birolo G

Subjects: Software*; DNA Barcoding, Taxonomic/DNA Barcoding, Taxonomic/DNA Barcoding, Taxonomic/*statistics & numerical data ; Metagenomics/Metagenomics/Metagenomics/*statistics & numerical data

  • Source: International journal of molecular sciences [Int J Mol Sci] 2021 May 18; Vol. 22 (10). Date of Electronic Publication: 2021 May 18.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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