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Academic Journal

A Standardized Pipeline for Assembly and Annotation of African Swine Fever Virus Genome.

  • Authors : Spinard E; U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center (PIADC), P.O. Box 848, Greenport, NY 11944, USA.; U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA.

Subjects: African Swine Fever Virus*/African Swine Fever Virus*/African Swine Fever Virus*/genetics ; African Swine Fever Virus*/African Swine Fever Virus*/African Swine Fever Virus*/classification ; African Swine Fever Virus*/African Swine Fever Virus*/African Swine Fever Virus*/isolation & purification

  • Source: Viruses [Viruses] 2024 Aug 13; Vol. 16 (8). Date of Electronic Publication: 2024 Aug 13.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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Academic Journal

Next-generation sequencing analysis with a population-specific human reference genome.

Subjects: Genome, Human* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Humans

  • Source: Genes & genetic systems [Genes Genet Syst] 2024 Dec 21; Vol. 99. Date of Electronic Publication: 2024 Oct 28.Publisher: Genetics Society of Japan Country of Publication: Japan NLM ID: 9607822 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

High-throughput single-molecule long-read RNA sequencing analysis of tissue-specific genes and isoforms in lettuce (Lactuca sativa L.).

  • Authors : Shi ZX; Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou, 510632, China.; BGI Genomics, BGI-Shenzhen, Shenzhen, China.

Subjects: Lactuca*/Lactuca*/Lactuca*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Sequence Analysis, RNA*/Sequence Analysis, RNA*/Sequence Analysis, RNA*/methods

  • Source: Communications biology [Commun Biol] 2024 Jul 31; Vol. 7 (1), pp. 920. Date of Electronic Publication: 2024 Jul 31.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

  • Authors : Kondratenko Y; Center for Algorithmic Biotechnology, Institute for Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia, 199004. .; Korobeynikov A

Subjects: High-Throughput Nucleotide Sequencing* ; Molecular Sequence Annotation* ; Software*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Jul 24; Vol. 21 (Suppl 12), pp. 303. Date of Electronic Publication: 2020 Jul 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

A Global Survey of the Full-Length Transcriptome of Apis mellifera by Single-Molecule Long-Read Sequencing.

  • Authors : Zheng SY; College of Animal Science and Technology, Jiangxi Agricultural University, Nanchang 330045, China.; Sino-German Joint Research Institute, Nanchang University, Nanchang 330047, China.

Subjects: Transcriptome* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Humans

  • Source: International journal of molecular sciences [Int J Mol Sci] 2023 Mar 18; Vol. 24 (6). Date of Electronic Publication: 2023 Mar 18.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology.

  • Authors : Zhang Y; Key Laboratory of Ministry of Education for Gastrointestinal Cancer, School of Basic Medical Sciences, Fujian Medical University, Fuzhou, Fujian 350004, China.; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; RNA Processing, Post-Transcriptional* ; Sequence Analysis, RNA*/Sequence Analysis, RNA*/Sequence Analysis, RNA*/methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D106-D116.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data.

  • Authors : Beiki H; Department of Animal Science, Iowa State University, 2255 Kildee Hall, Ames, IA, 50011, USA.; Liu H

Subjects: Alternative Splicing* ; Genome* ; Molecular Sequence Annotation*

  • Source: BMC genomics [BMC Genomics] 2019 May 07; Vol. 20 (1), pp. 344. Date of Electronic Publication: 2019 May 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association.

  • Authors : Choi SW; Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, 04763, Republic of Korea.; Nam JW

Subjects: High-Throughput Nucleotide Sequencing* ; Molecular Sequence Annotation* ; Sequence Analysis, RNA*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Feb 19; Vol. 19 (Suppl 1), pp. 41. Date of Electronic Publication: 2018 Feb 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Single-cell Iso-Sequencing enables rapid genome annotation for scRNAseq analysis.

  • Authors : Healey HM; Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA.; Bassham S

Subjects: High-Throughput Nucleotide Sequencing* ; Smegmamorpha*/Smegmamorpha*/Smegmamorpha*/genetics; 3' Untranslated Regions

  • Source: Genetics [Genetics] 2022 Mar 03; Vol. 220 (3).Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome.

  • Authors : Davenport KM; Department of Animal, Veterinary, and Food Sciences, University of Idaho, 875 Perimeter Dr, Moscow, ID 83843, USA.; Bickhart DM

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*; Animals

  • Source: GigaScience [Gigascience] 2022 Feb 04; Vol. 11.Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN:

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