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A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data

• Authors : Nguyen, Remy; Kapp, Joshua D; Sacco, Samuel

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Genetics

• Source: Journal of Heredity. 114(5)

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Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples.

• Authors : Vijayvargiya, Prakhar¹; Jeraldo, Patricio R.^2,3; Thoendel, Matthew J.¹

Subjects: *SHOTGUN sequencing; *PLASMODIUM falciparum; *BABESIA

• Source: PLoS ONE. 10/1/2019, Vol. 14 Issue 10, p1-12. 12p.

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Environmental Genome Shotgun Sequencing of the Sargasso Sea

• Authors : Venter, J. Craig; Remington, Karin; Heidelberg, John F.

• Source: Science, 2004 Apr 01. 304(5667), 66-74.

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Characterization of the reniform nematode genome by shotgun sequencing.

• Authors : Nyaku ST; a Department of Biological and Environmental Sciences, Alabama A&M University, Normal, AL 35762, USA.; Sripathi VR

Subjects: Genome, Helminth* ; Genomics*; Nematoda/Nematoda/Nematoda/*genetics

• Source: Genome [Genome] 2014 Apr; Vol. 57 (4), pp. 209-21. Date of Electronic Publication: 2014 Jun 13.Publisher: Canadian Science Publishing Country of Publication: Canada NLM ID: 8704544 Publication Model: Print-Electronic Cited Medium: Internet

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Near-optimal assembly for shotgun sequencing with noisy reads.

• Authors : Lam KK; Khalak A; Tse D

Subjects: Algorithms* ; Genome*; Genomics/Genomics/Genomics/*methods

• Source: BMC bioinformatics [BMC Bioinformatics] 2014; Vol. 15 Suppl 9, pp. S4. Date of Electronic Publication: 2014 Sep 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing.

• Authors : Louis, Sandrine¹; Tappu, Rewati-Mukund²; Damms-Machado, Antje¹

Subjects: *OVERWEIGHT persons; *GUT microbiome; *WEIGHT loss

• Source: PLoS ONE. 2/26/2016, Vol. 11 Issue 2, p1-18. 18p.

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Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species.

• Authors : Sveinsson S; Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada. ; Gill N

Subjects: Phylogeny*; Cacao/Cacao/Cacao/*genetics ; DNA Transposable Elements/DNA Transposable Elements/DNA Transposable Elements/*genetics

• Source: BMC genomics [BMC Genomics] 2013 Jul 24; Vol. 14, pp. 502. Date of Electronic Publication: 2013 Jul 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics.

• Authors : García-Garcerà M; Institut de Biologia Evolutiva, CSIC-UPF, Barcelona, Spain.; Gigli E

Subjects: Fossils*; DNA/DNA/DNA/*genetics ; Genomics/Genomics/Genomics/*methods

• Source: PloS one [PLoS One] 2011; Vol. 6 (8), pp. e24161. Date of Electronic Publication: 2011 Aug 31.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Print-Electronic Cited Medium: Internet

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Paleogenomics in a temperate environment: shotgun sequencing from an extinct Mediterranean caprine.

• Authors : Ramírez O; Institute of Evolutionary Biology (UPF-CSIC), Barcelona, Spain.; Gigli E

Subjects: Climate* ; Extinction, Biological* ; Genomics*

• Source: PloS one [PLoS One] 2009 May 22; Vol. 4 (5), pp. e5670. Date of Electronic Publication: 2009 May 22.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Electronic Cited Medium: Internet

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Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.

• Authors : Wernersson R; Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark. ; Schierup MH

Subjects: Genome*; Genomics/Genomics/Genomics/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

• Source: BMC genomics [BMC Genomics] 2005 May 10; Vol. 6, pp. 70. Date of Electronic Publication: 2005 May 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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