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Academic Journal

RACS: rapid analysis of ChIP-Seq data for contig based genomes.

  • Authors : Saettone A; Department of Chemistry and Biology, Ryerson University, 350 Victoria St, Toronto, M5B 2K3, Canada.; Ponce M

Subjects: Chromatin Immunoprecipitation Sequencing* ; Genome*; Chromosome Mapping

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Oct 29; Vol. 20 (1), pp. 533. Date of Electronic Publication: 2019 Oct 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.

  • Authors : Vorontsov IE; Vavilov Institute of General Genetics, Russian Academy of Sciences, GSP-1, Gubkina 3, Moscow, Russia, 119991.; Fedorova AD

Subjects: Genome* ; Sequence Analysis, DNA* ; Transcription Factors*

  • Source: BMC research notes [BMC Res Notes] 2018 Oct 23; Vol. 11 (1), pp. 756. Date of Electronic Publication: 2018 Oct 23.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-0500

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Academic Journal

Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface.

  • Authors : Denecker T; Institut de Biologie Intégrative de la Cellule (I2BC), Centre National de la Recherche Scientifique: UMR9198, Université Paris-Saclay, Université Paris-Sud - Paris 11, 11 - Bâtiment 400, Orsay, France. .; Lelandais G

Subjects: Chromatin Immunoprecipitation* ; High-Throughput Nucleotide Sequencing*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC research notes [BMC Res Notes] 2018 Oct 04; Vol. 11 (1), pp. 698. Date of Electronic Publication: 2018 Oct 04.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-0500

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Academic Journal

A Deconvolution Protocol for ChIP-Seq Reveals Analogous Enhancer Structures on the Mouse and Human Ribosomal RNA Genes.

  • Authors : Mars JC; Laboratory of Growth and Development, St-Patrick Research Group in Basic Oncology, Cancer Division of the Quebec University Hospital Research Centre, G1R 3S3, Canada.; Department of Molecular Biology, Medical Biochemistry and Pathology, Faculty of Medicine, Laval University, Québec, Canada.

Subjects: Enhancer Elements, Genetic* ; Genes, rRNA* ; Genome*

  • Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2018 Jan 04; Vol. 8 (1), pp. 303-314. Date of Electronic Publication: 2018 Jan 04.Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

ChIP-Seq analysis identifies p27(Kip1)-target genes involved in cell adhesion and cell signalling in mouse embryonic fibroblasts.

  • Authors : Biçer A; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.; Orlando S

Subjects: Genome* ; Transcription, Genetic*; Chromatin/Chromatin/Chromatin/*chemistry

  • Source: PloS one [PLoS One] 2017 Nov 20; Vol. 12 (11), pp. e0187891. Date of Electronic Publication: 2017 Nov 20 (Print Publication: 2017).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Identification of genome-wide targets of Olig2 in the adult mouse spinal cord using ChIP-Seq.

  • Authors : Darr AJ; The Miami Project to Cure Paralysis, Miami, Florida, United States of America.; Department of Neurological Surgery, University of Miami Miller School of Medicine, Miami, Florida, United States of America.

Subjects: Genome*; Oligodendrocyte Transcription Factor 2/Oligodendrocyte Transcription Factor 2/Oligodendrocyte Transcription Factor 2/*genetics ; Spinal Cord/Spinal Cord/Spinal Cord/*metabolism

  • Source: PloS one [PLoS One] 2017 Oct 19; Vol. 12 (10), pp. e0186091. Date of Electronic Publication: 2017 Oct 19 (Print Publication: 2017).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.

  • Authors : Nakato R; Research Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo, Japan.; Shirahige K

Subjects: Genome*; Binding Sites ; Chromatin Immunoprecipitation

  • Source: Briefings in bioinformatics [Brief Bioinform] 2017 Mar 01; Vol. 18 (2), pp. 279-290.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

COPAR: A ChIP-Seq Optimal Peak Analyzer.

  • Authors : Tang B; Epigenetics & Function Group, School of Internet of Things, Hohai University, Jiangsu 213022, China; School of Public Health & Biostatistics, Shanghai Jiao Tong University, Shanghai 200025, China.

Subjects: Software*; Genome/Genome/Genome/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BioMed research international [Biomed Res Int] 2017; Vol. 2017, pp. 5346793. Date of Electronic Publication: 2017 Mar 05.Publisher: Wiley Country of Publication: United States NLM ID: 101600173 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.

  • Authors : Lun AT; The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, VIC 3052, Australia Department of Medical Biology, The University of Melbourne, Parkville, VIC 3010, Australia.; Smyth GK

Subjects: Genome* ; Software*; Histones/Histones/Histones/*metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2016 Mar 18; Vol. 44 (5), pp. e45. Date of Electronic Publication: 2015 Nov 17.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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