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X-Mapper: fast and accurate sequence alignment via gapped x-mers

• Authors : Jeffry M. Gaston; Eric J. Alm; An-Ni Zhang

Subjects: Bioinformatics; Sequence alignment algorithms; K-mer

• Source: Genome Biology, Vol 26, Iss 1, Pp 1-27 (2025)

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TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers

• Authors : Walia, Sumit; Ye, Cheng; Bera, Arkid

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Genetics

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RAPIDx: High-Performance ReRAM Processing In-Memory Accelerator for Sequence Alignment

• Authors : Xu, Weihong; Gupta, Saransh; Moshiri, Niema

Subjects: Engineering; Electrical Engineering; Electronics

• Source: IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 42(10)

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ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes

• Authors : Moshiri, Niema

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Genetics

• Source: Bioinformatics. 37(5)

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ADEPT: a domain independent sequence alignment strategy for gpu architectures

• Authors : Awan, Muaaz G; Deslippe, Jack; Buluc, Aydin

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Human Genome

• Source: BMC Bioinformatics. 21(1)

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RVdb: a comprehensive resource and analysis platform for rhinovirus research.

• Authors : Zhao, Peng¹ (AUTHOR); Zhou, Siyu¹ (AUTHOR); Xu, Panpan¹ (AUTHOR)

Subjects: *RHINOVIRUSES; *SEQUENCE alignment; *GENETIC variation

• Source: Nucleic Acids Research. 1/5/2024, Vol. 52 Issue D1, pD770-D776. 7p.

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How can Sequence Alignment Method Affect the Phylogenetic Relationship Results?

• Authors : Abou-Shaara, Hossam F.¹

• Source: Scientific Papers: Animal Science & Biotechnologies / Lucrari Stiintifice: Zootehnie si Biotehnologii. 2020, Vol. 53 Issue 1, p52-57. 6p.

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GPU accelerated partial order multiple sequence alignment for long reads self-correction

• Authors : Peverelli, Francesco; Di Tucci, Lorenzo; Santambrogio, Marco D

Subjects: Networking and Information Technology R&D (NITRD); Biotechnology; Bioengineering

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GPU accelerated partial order multiple sequence alignment for long reads self-correction

• Authors : Peverelli, F; Tucci, LD; Santambrogio, MD

Subjects: Biotechnology; Bioengineering; Human Genome

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Distributed many-to-many protein sequence alignment using sparse matrices

• Authors : Selvitopi, O; Ekanayake, S; Guidi, G

Subjects: Genetics; Generic health relevance; cs.DC

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