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Hierarchical cooperation of transcription factors from integration analysis of DNA sequences, ChIP-Seq and ChIA-PET data.

• Authors : Wang, Ruimin¹ ; Wang, Yunlong¹ ; Zhang, Xueying¹

• Source: BMC Genomics. 5/8/2019 Supplement 3, Vol. 20 Issue 3, pN.PAG-N.PAG. 1p. 1 Color Photograph, 4 Diagrams, 1 Chart.

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3CPET: Finding Co-Factor Complexes from ChIA-Pet Data Using a Hierarchical Dirichlet Process

• Authors : Djekidel, Mohamed Nadhir; Liang, Zhengyu; Wang, Qi ...

Subjects: Chromatin; Breast--Cancer; beta-Globins

• Source: Genome Biology

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Chromatin loop anchors predict transcript and exon usage.

• Authors : Zhang, Yu¹ (AUTHOR); Cai, Yichao² (AUTHOR); Roca, Xavier³ (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2021, Vol. 22 Issue 6, p1-11. 11p.

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Multi‐omics mapping of chromatin interaction resolves the fine hierarchy of 3D genome in allotetraploid cotton.

• Authors : Huang, Xianhui¹ (AUTHOR); Tian, Xuehan¹ (AUTHOR); Pei, Liuling¹ (AUTHOR)

Subjects: *CHROMATIN; *GENOMICS; *COTTON

• Source: Plant Biotechnology Journal. Sep2022, Vol. 20 Issue 9, p1639-1641. 3p.

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EXPRESSO: a multi-omics database to explore multi-layered 3D genomic organization.

• Authors : Cai, Liuyang¹ (AUTHOR); Qiao, Jun¹ (AUTHOR); Zhou, Ruixin¹ (AUTHOR)

Subjects: *GENETIC regulation; *GENETIC transcription regulation; *GENE expression

• Source: Nucleic Acids Research. 1/6/2025, Vol. 53 Issue D1, pD79-D90. 12p.

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Chromatin loop anchors predict transcript and exon usage

• Authors : Yichao Cai; Yu Zhang; Chee Keong Kwoh

Subjects: Epigenomics; Transcription, Genetic; AcademicSubjects/SCI01060

• Source: Briefings in Bioinformatics

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Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences

• Authors : Ying Zhang; Vinay Tergaonkar; Xinya Li ...

Subjects: FOS: Computer and information sciences; Bioinformatics; QH301-705.5

• Source: Genome Biology, Vol 22, Iss 1, Pp 1-25 (2021)Genome Biology

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PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence

• Authors : Dustin Ebert; Crystal N. Marconett; Caitlin Mills

Subjects: Genetic Screens; Enhancer Elements; Science

• Source: PLoS ONE, Vol 15, Iss 12, p e0243791 (2020)PLoS ONE

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ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements

• Authors : Leena Hilakivi-Clarke; Robert Clarke; Xi Chen

Subjects: Computer science; CHROMATIN-STATE DISCOVERY; genetic processes

• Source: PLoS Computational BiologyPLoS Computational Biology, Vol 17, Iss 7, p e1009203 (2021)

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Integration of Enhancer-Promoter Interactions with GWAS Summary Results Identifies Novel Schizophrenia-Associated Genes and Pathways.

• Authors : Chong Wu¹; Wei Pan¹

Subjects: *GENETICS of schizophrenia; *SCHIZOPHRENIA risk factors; *GENE expression

• Source: Genetics. Jul2018, Vol. 209 Issue 3, p699-709. 11p.

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