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Academic Journal

Reconstruction of a robust bacterial replication module.

  • Authors : Wang T; Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences/Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, PR China.; He F

Subjects: DNA Replication*/DNA Replication*/DNA Replication*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/growth & development

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Oct 14; Vol. 52 (18), pp. 11394-11407.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Circulating Bacterial DNA in Colorectal Cancer Patients: The Potential Role of Fusobacterium nucleatum .

  • Authors : Koliarakis I; Department of Anatomy, School of Medicine, University of Crete, 70013 Heraklion, Greece.; Lagkouvardos I

Subjects: Fusobacterium nucleatum*/Fusobacterium nucleatum*/Fusobacterium nucleatum*/genetics ; Fusobacterium nucleatum*/Fusobacterium nucleatum*/Fusobacterium nucleatum*/isolation & purification ; Colorectal Neoplasms*/Colorectal Neoplasms*/Colorectal Neoplasms*/microbiology

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Aug 20; Vol. 25 (16). Date of Electronic Publication: 2024 Aug 20.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Bridging DNA contacts allow Dps from E. coli to condense DNA.

  • Authors : Shahu S; Department of Biochemistry, Indian Institute of Science, Bangalore, India.; Vtyurina N

Subjects: Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/metabolism ; Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/chemistry ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 May 08; Vol. 52 (8), pp. 4456-4465.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Isolation and purification of DNA double-strand break repair intermediates for understanding complex molecular mechanisms.

  • Authors : Yasmin T; Institute of Cell Biology, University of Edinburgh, Edinburgh, United Kingdom.; Azeroglu B

Subjects: DNA Breaks, Double-Stranded* ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/metabolism

  • Source: PloS one [PLoS One] 2024 Oct 11; Vol. 19 (10), pp. e0308786. Date of Electronic Publication: 2024 Oct 11 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Engineered transcription activator-like effector dimer proteins confer DNA loop-dependent gene repression comparable to Lac repressor.

  • Authors : Becker NA; Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA.; Peters JP

Subjects: Lac Repressors*/Lac Repressors*/Lac Repressors*/metabolism ; Lac Repressors*/Lac Repressors*/Lac Repressors*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Sep 09; Vol. 52 (16), pp. 9996-10004.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Re-engineered guide RNA enables DNA loops and contacts modulating repression in E. coli.

  • Authors : Yang Y; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Solna, Stockholm 17177, Sweden.; Rocamonde-Lago I

Subjects: Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/metabolism ; RNA, Guide, CRISPR-Cas Systems*/RNA, Guide, CRISPR-Cas Systems*/RNA, Guide, CRISPR-Cas Systems*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Aug 27; Vol. 52 (15), pp. 9328-9339.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

The role of DNA polymerase I in tolerating single-strand breaks generated at clustered DNA damage in Escherichia coli.

  • Authors : Shikazono N; Kansai Institute for Photon Science, National Institutes for Quantum Science and Technology (QST), 8-1-7 Umemidai, Kizugawa, Kyoto, 619-0215, Japan. .; Akamatsu K

Subjects: Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics ; DNA Breaks, Single-Stranded* ; DNA Polymerase I*/DNA Polymerase I*/DNA Polymerase I*/metabolism

  • Source: Scientific reports [Sci Rep] 2024 Aug 18; Vol. 14 (1), pp. 19124. Date of Electronic Publication: 2024 Aug 18.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Differential roles of positive and negative supercoiling in organizing the E. coli genome.

  • Authors : Fu Z; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA.; Guo MS

Subjects: DNA, Bacterial*/DNA, Bacterial*/DNA, Bacterial*/metabolism ; DNA, Superhelical*/DNA, Superhelical*/DNA, Superhelical*/metabolism ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 25; Vol. 52 (2), pp. 724-737.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.

  • Authors : Schumacher MA; Department of Biochemistry, 307 Research Dr., Box 3711, Duke University Medical Center, Durham, NC 27710, USA.; Singh RR

Subjects: DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/metabolism ; DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/chemistry ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 08; Vol. 52 (12), pp. 7354-7366.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Controlling genome topology with sequences that trigger post-replication gap formation during replisome passage: the E. coli RRS elements.

  • Authors : Pham P; Departments of Biological Sciences and Chemistry, University of Southern California, Los Angeles, CA 90089-2910, USA.; Wood EA

Subjects: DNA Replication*/DNA Replication*/DNA Replication*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jun 24; Vol. 52 (11), pp. 6392-6405.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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