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Academic Journal

HU promotes higher order chromosome organization and influences DNA replication rates in Streptococcus pneumoniae.

Authors : Mazzuoli MV; Department of Fundamental Microbiology, Faculty of Biology and Medicine, University of Lausanne, Biophore Building, Lausanne, CH-1015, Switzerland.; van Raaphorst R

Subjects: Streptococcus pneumoniae*/Streptococcus pneumoniae*/Streptococcus pneumoniae*/genetics ; Streptococcus pneumoniae*/Streptococcus pneumoniae*/Streptococcus pneumoniae*/metabolism ; DNA Replication*

Source: Nucleic acids research [Nucleic Acids Res] 2025 Apr 22; Vol. 53 (8).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Mechanisms of Viral DNA Replication of Human Papillomavirus: E2 Protein-Dependent Recruitment of E1 DNA Helicase to the Origin of DNA Replication.

Authors : Rana A; Department of Medical and Molecular Sciences, College of Health Sciences, University of Delaware, Newark, DE 19716, USA.; Ammon Pinizzotto Biopharmaceutical Innovation Center, Newark, DE 19713, USA.

Subjects: DNA Replication* ; Virus Replication* ; DNA Helicases*/DNA Helicases*/DNA Helicases*/metabolism

Source: International journal of molecular sciences [Int J Mol Sci] 2025 May 02; Vol. 26 (9). Date of Electronic Publication: 2025 May 02.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

DNA-Protein Binding is Dominated by Short Anchoring Elements.

Authors : Chen H; State Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, and Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, 100871, China.; Xu Y

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; DNA*/DNA*/DNA*/metabolism

Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2025 May; Vol. 12 (19), pp. e2414823. Date of Electronic Publication: 2025 Mar 26.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

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Academic Journal

Negative DNA supercoiling enhances DARS2 binding of DNA-bending protein IHF in the activation of Fis-dependent ATP-DnaA production.

Authors : Kasho K; Department of Molecular Biology, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka 812-8582, Japan.; Miyoshi K

Subjects: DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/metabolism ; Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/metabolism ; Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/genetics

Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 11; Vol. 53 (2).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks.

Authors : Huang R; School of Information Engineering, Jingdezhen Ceramic University, Jingdezhen Jiangxi, China.; Qiu W

Subjects: Neural Networks, Computer* ; DNA*/DNA*/DNA*/metabolism ; DNA*/DNA*/DNA*/chemistry

Source: PloS one [PLoS One] 2025 May 13; Vol. 20 (5), pp. e0320817. Date of Electronic Publication: 2025 May 13 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK.

Authors : Helsem SA; Department of Life Sciences and Health, Faculty of Health Sciences, OsloMet, Oslo, Norway.; Alfsnes K

Subjects: Bacterial Proteins*/Bacterial Proteins*/Bacterial Proteins*/metabolism ; Bacterial Proteins*/Bacterial Proteins*/Bacterial Proteins*/chemistry ; DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/chemistry

Source: PloS one [PLoS One] 2025 May 08; Vol. 20 (5), pp. e0315160. Date of Electronic Publication: 2025 May 08 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

The molecular basis for DNA-binding by competence T4P is distinct in a representative Gram-positive and Gram-negative species.

Authors : Christman ND; Department of Biology, Indiana University, Bloomington, Indiana, United States of America.; Dalia AB

Source: PLoS pathogens [PLoS Pathog] 2025 Apr 21; Vol. 21 (4), pp. e1013128. Date of Electronic Publication: 2025 Apr 21 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

DNA repair protein RAD50 is involved in the streptozotocin-induced diabetes susceptibility of mice.

Authors : Miyasaka Y; Division of Experimental Animals, Graduate School of Medicine, Nagoya University, 65 Tsurumai-cho, Showa-ku, Nagoya, Aichi 466-8550, Japan.; Maegawa T

Subjects: Diabetes Mellitus, Experimental*/Diabetes Mellitus, Experimental*/Diabetes Mellitus, Experimental*/genetics ; Genetic Predisposition to Disease*/Genetic Predisposition to Disease*/Genetic Predisposition to Disease*/genetics ; DNA Repair*/DNA Repair*/DNA Repair*/genetics

Source: Experimental animals [Exp Anim] 2025 Apr 20; Vol. 74 (2), pp. 264-275. Date of Electronic Publication: 2024 Dec 24.Publisher: Japanese Association for Laboratory Animal Science Country of Publication: Japan NLM ID: 9604830 Publication Model: Print-Electronic Cited

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Academic Journal

Divergent dimerization mechanisms and conserved DNA-binding function in PFam12 proteins of Borrelia burgdorferi.

Authors : Brangulis K; Latvian Biomedical Research and Study Centre, Ratsupites 1 K-1, Riga, 1067, Latvia. .; Tupina D

Subjects: Borrelia burgdorferi*/Borrelia burgdorferi*/Borrelia burgdorferi*/metabolism ; Borrelia burgdorferi*/Borrelia burgdorferi*/Borrelia burgdorferi*/genetics ; DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/metabolism

Source: Scientific reports [Sci Rep] 2025 Apr 03; Vol. 15 (1), pp. 11518. Date of Electronic Publication: 2025 Apr 03.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Host 3' flap endonuclease Mus81 plays a critical role in trimming the terminal redundancy of hepatitis B virus relaxed circular DNA during covalently closed circular DNA formation.

Authors : Zhang H; Department of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.

Subjects: DNA, Circular*/DNA, Circular*/DNA, Circular*/genetics ; DNA, Circular*/DNA, Circular*/DNA, Circular*/metabolism ; Hepatitis B virus*/Hepatitis B virus*/Hepatitis B virus*/genetics

Source: PLoS pathogens [PLoS Pathog] 2025 Feb 06; Vol. 21 (2), pp. e1012918. Date of Electronic Publication: 2025 Feb 06 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet

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نتائج البحث

فلترة النتائج

HU promotes higher order chromosome organization and influences DNA replication rates in Streptococcus pneumoniae.

Mechanisms of Viral DNA Replication of Human Papillomavirus: E2 Protein-Dependent Recruitment of E1 DNA Helicase to the Origin of DNA Replication.

DNA-Protein Binding is Dominated by Short Anchoring Elements.

Negative DNA supercoiling enhances DARS2 binding of DNA-bending protein IHF in the activation of Fis-dependent ATP-DnaA production.

iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks.

Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK.

The molecular basis for DNA-binding by competence T4P is distinct in a representative Gram-positive and Gram-negative species.

DNA repair protein RAD50 is involved in the streptozotocin-induced diabetes susceptibility of mice.

Divergent dimerization mechanisms and conserved DNA-binding function in PFam12 proteins of Borrelia burgdorferi.

Host 3' flap endonuclease Mus81 plays a critical role in trimming the terminal redundancy of hepatitis B virus relaxed circular DNA during covalently closed circular DNA formation.

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