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  • 1-10 ل  2,213 نتائج ل ""Molecular Dynamics Simulation""

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Subject : dna
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Academic Journal

High Bendability of Short RNA-DNA Hybrid Duplex Revealed by Single-Molecule Cyclization and Molecular Dynamics Simulations.

  • Authors : Wu B; Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University, Wuhan 430072, China.; Tian F

Subjects: Molecular Dynamics Simulation* ; RNA*/RNA*/RNA*/chemistry ; DNA*/DNA*/DNA*/chemistry

  • Source: Biomolecules [Biomolecules] 2025 May 15; Vol. 15 (5). Date of Electronic Publication: 2025 May 15.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Molecular dynamics simulations of human cohesin subunits identify DNA binding sites and their potential roles in DNA loop extrusion.

  • Authors : Gu C; Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.; Takada S

Subjects: Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/chemistry ; Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/metabolism ; Cell Cycle Proteins*/Cell Cycle Proteins*/Cell Cycle Proteins*/chemistry

  • Source: PLoS computational biology [PLoS Comput Biol] 2025 Apr 04; Vol. 21 (4), pp. e1012493. Date of Electronic Publication: 2025 Apr 04 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

The Thermodynamic and Kinetic Properties of the dA-rU DNA-RNA Hybrid Base Pair Investigated via Molecular Dynamics Simulations.

  • Authors : Liu T; School of Medical Engineering, Xinxiang Medical University, Xinxiang 453003, China.; Bao L

Subjects: Molecular Dynamics Simulation* ; DNA*/DNA*/DNA*/chemistry ; Base Pairing*

  • Source: Molecules (Basel, Switzerland) [Molecules] 2024 Oct 17; Vol. 29 (20). Date of Electronic Publication: 2024 Oct 17.Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049

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Academic Journal

Structure Characterization of Zinc Finger Motif 1 and 2 of GLI1 DNA Binding Region.

  • Authors : Wu M; Scientific Platforms, Southern Research, 2000 9th Avenue South, Birmingham, AL 35205, USA.; Jahan N

Subjects: Zinc Finger Protein GLI1*/Zinc Finger Protein GLI1*/Zinc Finger Protein GLI1*/metabolism ; Zinc Finger Protein GLI1*/Zinc Finger Protein GLI1*/Zinc Finger Protein GLI1*/chemistry ; Zinc Finger Protein GLI1*/Zinc Finger Protein GLI1*/Zinc Finger Protein GLI1*/genetics

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Dec 13; Vol. 25 (24). Date of Electronic Publication: 2024 Dec 13.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Nucleosomal DNA unwinding pathway through canonical and non-canonical histone disassembly.

  • Authors : Nozawa H; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.; Nagae F

Subjects: Nucleosomes*/Nucleosomes*/Nucleosomes*/metabolism ; Nucleosomes*/Nucleosomes*/Nucleosomes*/chemistry ; Nucleosomes*/Nucleosomes*/Nucleosomes*/genetics

  • Source: Communications biology [Commun Biol] 2024 Sep 14; Vol. 7 (1), pp. 1144. Date of Electronic Publication: 2024 Sep 14.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Accelerated Screening of Alternative DNA Base-Organic Molecule-Base Architectures via Integrated Theory and Experiment.

  • Authors : Feng X; Institute of Clinical Pharmacology, Key Laboratory of Anti-Inflammatory and Immune Medicine, Ministry of Education, Anhui Collaborative Innovation Center of Anti-Inflammatory and Immune Medicine, Anhui Medical University, Hefei, Anhui, 230032, China.; Wang X

Subjects: DNA*/DNA*/DNA*/chemistry ; Base Pairing* ; Molecular Dynamics Simulation*

  • Source: Angewandte Chemie (International ed. in English) [Angew Chem Int Ed Engl] 2024 Aug 26; Vol. 63 (35), pp. e202408003. Date of Electronic Publication: 2024 Jul 02.Publisher: Wiley-VCH Country of Publication: Germany NLM ID: 0370543 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1521-3773

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Academic Journal

Loops are geometric catalysts for DNA integration.

  • Authors : Battaglia C; School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh EH9 3FD, UK.; Michieletto D

Subjects: Molecular Dynamics Simulation* ; Nucleic Acid Conformation* ; DNA*/DNA*/DNA*/chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Aug 12; Vol. 52 (14), pp. 8184-8192.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Melting Profile of DNA in Crowded Solution: Model-Based Study.

  • Authors : Mathur N; Department of Physics, Birla Institute of Technology & Science, Pilani 333031, India.; Singh A

Subjects: DNA*/DNA*/DNA*/chemistry ; Nucleic Acid Denaturation*; Molecular Dynamics Simulation

  • Source: International journal of molecular sciences [Int J Mol Sci] 2025 May 31; Vol. 26 (11). Date of Electronic Publication: 2025 May 31.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Ionization of DNA Nucleotides in Explicit Solution.

  • Authors : Bai J; School of Science, Dalian Maritime University, Linghai Road 1, Dalian 116026, China.; Zhang Y

Subjects: Nucleotides*/Nucleotides*/Nucleotides*/chemistry ; DNA*/DNA*/DNA*/chemistry; Water/Water/Water/chemistry

  • Source: Molecules (Basel, Switzerland) [Molecules] 2025 May 19; Vol. 30 (10). Date of Electronic Publication: 2025 May 19.Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049

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Academic Journal

Cleaving DNA with DNA: Cooperative Tuning of Structure and Reactivity Driven by Copper Ions.

  • Authors : Dantu SC; Department of Computer Science, Brunel University London, Kingston Lane, Uxbridge, UB8 3PH, UK.; Khalil M

Subjects: Copper*/Copper*/Copper*/chemistry ; DNA*/DNA*/DNA*/chemistry ; Molecular Dynamics Simulation*

  • Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2024 Apr; Vol. 11 (16), pp. e2306710. Date of Electronic Publication: 2024 Feb 28.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

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  • 1-10 ل  2,213 نتائج ل ""Molecular Dynamics Simulation""