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  • 1-10 ل  3,742 نتائج ل ""high-throughput nucleotide sequencing""

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Subject : computational biology
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Academic Journal

PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data.

  • Authors : Hu X; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA. .; Hurtado-Gonzales OP

Subjects: Computational Biology* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; RNA-Seq

  • Source: BMC bioinformatics [BMC Bioinformatics] 2023 Dec 13; Vol. 24 (1), pp. 470. Date of Electronic Publication: 2023 Dec 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Bioinformatics Goes Viral: I. Databases, Phylogenetics and Phylodynamics Tools for Boosting Virus Research.

  • Authors : Vello F; Synthetic Biology and Biotechnology Unit, Department of Biology, University of Padua, 35131 Padua, Italy.; Filippini F

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Phylogeny*; Humans

  • Source: Viruses [Viruses] 2024 Sep 06; Vol. 16 (9). Date of Electronic Publication: 2024 Sep 06.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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Academic Journal

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.

Subjects: Workflow* ; COVID-19*/COVID-19*/COVID-19*/immunology ; COVID-19*/COVID-19*/COVID-19*/virology

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Jul 26; Vol. 20 (7), pp. e1012265. Date of Electronic Publication: 2024 Jul 26 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Cloud-based introduction to BASH programming for biologists.

  • Authors : Wilkins OM; Genomic Data Science Core, Center for Quantitative Biology (COBRE), Dartmouth College, 1 Medical Center Drive, Lebanon, NH 03766, United States.; Department of Biomedical Data Science, Geisel School of Medicine, Dartmouth College, 1 Medical Center Drive, Lebanon, NH 03766, United States.

Subjects: Cloud Computing* ; Software* ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jul 23; Vol. 25 (Supplement_1).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

BioPipeline Creator-a user-friendly Java-based GUI for managing and customizing biological data pipelines.

Subjects: Software* ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; User-Computer Interface*

  • Source: Scientific reports [Sci Rep] 2024 Jul 17; Vol. 14 (1), pp. 16572. Date of Electronic Publication: 2024 Jul 17.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance.

  • Authors : Cumlin T; Department of Medical Sciences, Section for Clinical Microbiology, Uppsala University, Akademiska Sjukhuset Entrance 40, 751 85 Uppsala, Sweden.; Karlsson I

Subjects: SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/genetics ; COVID-19*/COVID-19*/COVID-19*/epidemiology ; COVID-19*/COVID-19*/COVID-19*/virology

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Jun 17; Vol. 25 (12). Date of Electronic Publication: 2024 Jun 17.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Pairtools: From sequencing data to chromosome contacts.

Subjects: Software* ; Chromosomes*/Chromosomes*/Chromosomes*/genetics ; Chromosomes*/Chromosomes*/Chromosomes*/chemistry

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 May 29; Vol. 20 (5), pp. e1012164. Date of Electronic Publication: 2024 May 29 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.

Subjects: Metagenomics*/Metagenomics*/Metagenomics*/methods ; SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/genetics ; SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/classification

  • Source: Genome medicine [Genome Med] 2024 Apr 25; Vol. 16 (1), pp. 61. Date of Electronic Publication: 2024 Apr 25.Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X

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Academic Journal

ReporType: A Flexible Bioinformatics Tool for Targeted Loci Screening and Typing of Infectious Agents.

  • Authors : Cruz H; Institute of Biomedicine-iBiMED, Department of Medical Sciences, University of Aveiro, 3810-193 Aveiro, Portugal.; Pinheiro M

Subjects: Computational Biology* ; Genomics*; Humans

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Mar 09; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 09.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Editorial & Opinion

Three Grand Challenges in High Throughput Omics Technologies.

  • Authors : Suravajhala P; Amrita School of Biotechnology, Amrita Vishwavidyapeetham, Amritapuri, Clappana, Kerala 690525, India.; Bioclues.org, Hyderabad 500072, India.

Subjects: Computational Biology* ; High-Throughput Nucleotide Sequencing*; Genomics

  • Source: Biomolecules [Biomolecules] 2022 Sep 04; Vol. 12 (9). Date of Electronic Publication: 2022 Sep 04.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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  • 1-10 ل  3,742 نتائج ل ""high-throughput nucleotide sequencing""