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Academic Journal

Rare copy number variant analysis in case-control studies using snp array data: a scalable and automated data analysis pipeline.

  • Authors : Artaza H; Department of Clinical Science, University of Bergen, Bergen, Norway.; K.G. Jebsen Center for Autoimmune Diseases, University of Bergen, Bergen, Norway.

Subjects: Polymorphism, Single Nucleotide*/Polymorphism, Single Nucleotide*/Polymorphism, Single Nucleotide*/genetics ; DNA Copy Number Variations*/DNA Copy Number Variations*/DNA Copy Number Variations*/genetics ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Nov 15; Vol. 25 (1), pp. 357. Date of Electronic Publication: 2024 Nov 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice.

  • Authors : Blanchard MW; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.

Subjects: Genotyping Techniques*/Genotyping Techniques*/Genotyping Techniques*/methods ; Genotyping Techniques*/Genotyping Techniques*/Genotyping Techniques*/standards ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Oct 07; Vol. 14 (10).Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers.

  • Authors : Kenn M; Section of Biosimulation and Bioinformatics, Center for Medical Statistics, Informatics and Intelligent Systems (CeMSIIS), Medical University of Vienna, Spitalgasse 23, 1090 Vienna, Austria.; Cacsire Castillo-Tong D

Subjects: Biomarkers, Tumor*/Biomarkers, Tumor*/Biomarkers, Tumor*/biosynthesis ; Biomarkers, Tumor*/Biomarkers, Tumor*/Biomarkers, Tumor*/genetics ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/genetics

  • Source: BioMed research international [Biomed Res Int] 2020 Aug 06; Vol. 2020, pp. 1363827. Date of Electronic Publication: 2020 Aug 06 (Print Publication: 2020).Publisher: Hindawi Pub. Co Country of Publication: United States NLM ID: 101600173 Publication Model: eCollection Cited Medium: Internet ISSN:

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Academic Journal

Identification of potential microRNA panels for pancreatic cancer diagnosis using microarray datasets and bioinformatics methods.

  • Authors : Shams R; Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, Tehran, Iran. .; Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran. .

Subjects: Gene Expression Regulation, Neoplastic* ; Oligonucleotide Array Sequence Analysis*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: Scientific reports [Sci Rep] 2020 May 05; Vol. 10 (1), pp. 7559. Date of Electronic Publication: 2020 May 05.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Development of a new oligonucleotide block location-based feature extraction (BLBFE) method for the classification of riboswitches.

  • Authors : Golabi F; Genomic Signal Processing Laboratory, Faculty of Biomedical Engineering, Sahand University of Technology, Tabriz, Iran.; School of Advanced Biomedical Sciences (SABS), Tabriz University of Medical Sciences, Tabriz, Iran.

Subjects: Computational Biology*; Oligonucleotides/Oligonucleotides/Oligonucleotides/*genetics ; Riboswitch/Riboswitch/Riboswitch/*genetics

  • Source: Molecular genetics and genomics : MGG [Mol Genet Genomics] 2020 Mar; Vol. 295 (2), pp. 525-534. Date of Electronic Publication: 2020 Jan 04.Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 101093320 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Microarray analysis of infectious bronchitis virus infection of chicken primary dendritic cells.

  • Authors : Lin J; College of Life Sciences, Nanjing Agricultural University, Wei gang 1, Nanjing, Jiangsu, 210095, People's Republic of China.; College of Veterinary medicine, Nanjing Agricultural University, Wei gang 1, Nanjing, Jiangsu, 210095, People's Republic of China.

Subjects: Computational Biology* ; Oligonucleotide Array Sequence Analysis*; Coronavirus Infections/Coronavirus Infections/Coronavirus Infections/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jul 08; Vol. 20 (1), pp. 557. Date of Electronic Publication: 2019 Jul 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Leukemia multiclass assessment and classification from Microarray and RNA-seq technologies integration at gene expression level.

  • Authors : Castillo D; Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain.; Galvez JM

Subjects: Computational Biology* ; Gene Expression Profiling* ; Oligonucleotide Array Sequence Analysis*

  • Source: PloS one [PLoS One] 2019 Feb 12; Vol. 14 (2), pp. e0212127. Date of Electronic Publication: 2019 Feb 12 (Print Publication: 2019).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A novel gene selection algorithm for cancer classification using microarray datasets.

  • Authors : Alanni R; School of Information Technology, Deakin University, Burwood, 3125, VIC, Australia. .; Hou J

Subjects: Oligonucleotide Array Sequence Analysis* ; Support Vector Machine*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC medical genomics [BMC Med Genomics] 2019 Jan 15; Vol. 12 (1), pp. 10. Date of Electronic Publication: 2019 Jan 15.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794

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Academic Journal

Blood-based gene-expression biomarkers identification for the non-invasive diagnosis of Parkinson's disease using two-layer hybrid feature selection.

  • Authors : Augustine J; Bioinformatics Lab, Department of Computer Science, Cochin University of Science and Technology, Kerala 682022, India. Electronic address: .; Jereesh AS

Subjects: Genetic Markers*; Computational Biology/Computational Biology/Computational Biology/*methods ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods

  • Source: Gene [Gene] 2022 May 20; Vol. 823, pp. 146366. Date of Electronic Publication: 2022 Feb 22.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis.

  • Authors : Zhou Y; Genomics Institute of the Novartis Research Foundation, 3115 Merryfield Row, San Diego, CA 92121, USA. ; Abagyan R

Subjects: Algorithms*; Computational Biology/Computational Biology/Computational Biology/*methods ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2002; Vol. 3, pp. 3. Date of Electronic Publication: 2002 Jan 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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