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Academic Journal

Bioinformatics analysis of the Microsporidia sp. MB genome: a malaria transmission-blocking symbiont of the Anopheles arabiensis mosquito.

  • Authors : Ang'ang'o LM; Department of Biochemistry, Microbiology, and Bioinformatics, Research Unit in Bioinformatics (RUBi), Rhodes University, Makhanda, 6140, South Africa.; International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya.

Subjects: Anopheles*/Anopheles*/Anopheles*/microbiology ; Anopheles*/Anopheles*/Anopheles*/parasitology ; Anopheles*/Anopheles*/Anopheles*/genetics

  • Source: BMC genomics [BMC Genomics] 2024 Nov 22; Vol. 25 (1), pp. 1132. Date of Electronic Publication: 2024 Nov 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Metabolic modelling as a powerful tool to identify critical components of Pneumocystis growth medium.

  • Authors : Nev OA; Department of Biosciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, United Kingdom.; Medical Research Council Centre for Medical Mycology at the University of Exeter, Exeter, United Kingdom.

Subjects: Culture Media*/Culture Media*/Culture Media*/chemistry ; Culture Media*/Culture Media*/Culture Media*/metabolism ; Models, Biological*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Oct 28; Vol. 20 (10), pp. e1012545. Date of Electronic Publication: 2024 Oct 28 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Bioinformatic mapping of a more precise Aspergillus niger degradome.

  • Authors : Dong Z; Henan Provincial Engineering Laboratory of Insect Bio-Reactor and Henan Key Laboratory of Ecological Security for Water Region of Mid-Line of South-To-North, Nanyang Normal University, 1638 Wolong Road, Nanyang, 473061, Henan, People's Republic of China. .; Yang S

Subjects: Genome, Fungal* ; Proteolysis*; Aspergillus niger/Aspergillus niger/Aspergillus niger/*metabolism

  • Source: Scientific reports [Sci Rep] 2021 Jan 12; Vol. 11 (1), pp. 693. Date of Electronic Publication: 2021 Jan 12.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts.

  • Authors : Monteiro PT; Department of Computer Science and Engineering, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal.; INESC-ID, R. Alves Redol, 9, 1000-029 Lisbon, Portugal.

Subjects: Databases, Genetic* ; Gene Expression Regulation, Fungal* ; Genome, Fungal*

  • Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D642-D649.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Ensembl Genomes 2020-enabling non-vertebrate genomic research.

  • Authors : Howe KL; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Contreras-Moreira B

Subjects: Databases, Genetic* ; Genetic Variation* ; Genome, Bacterial*

  • Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D689-D695.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Computational discovery and annotation of conserved small open reading frames in fungal genomes.

  • Authors : Mat-Sharani S; Centre for Frontier Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM, 43600, Bangi, Selangor, Malaysia.; Malaysia Genome Institute, Ministry of Science, Technology & Innovation, Jalan Bangi, 43000, Kajang, Selangor, Malaysia.

Subjects: Conserved Sequence* ; Genome, Fungal*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Feb 04; Vol. 19 (Suppl 13), pp. 551. Date of Electronic Publication: 2019 Feb 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.

  • Authors : Nilsson RH; University of Gothenburg, Department of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, Box 461, 405 30 Gothenburg, Sweden.; Larsson KH

Subjects: Databases, Nucleic Acid* ; Genome, Fungal* ; Genomics*/Genomics*/Genomics*/methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2019 Jan 08; Vol. 47 (D1), pp. D259-D264.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Target-Pathogen: a structural bioinformatic approach to prioritize drug targets in pathogens.

  • Authors : Sosa EJ; IQUIBICEN-CONICET, Ciudad Universitaria, Pabellón 2, C1428EHA Ciudad de Buenos Aires, Argentina.; Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón 2, C1428EHA Ciudad de Buenos Aires, Argentina.

Subjects: Databases, Factual* ; Genome, Bacterial* ; Genome, Fungal*

  • Source: Nucleic acids research [Nucleic Acids Res] 2018 Jan 04; Vol. 46 (D1), pp. D413-D418.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

  • Authors : Istace B; Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France.; Friedrich A

Subjects: Genome, Fungal* ; Genomics*/Genomics*/Genomics*/methods; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: GigaScience [Gigascience] 2017 Feb 01; Vol. 6 (2), pp. 1-13.Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts.

  • Authors : Monteiro PT; Department of Computer Science and Engineering, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal .; INESC-ID, R. Alves Redol, 9, 1000-029 Lisbon, Portugal.

Subjects: Databases, Genetic* ; Gene Expression Regulation, Fungal* ; Genes, Fungal*

  • Source: Nucleic acids research [Nucleic Acids Res] 2017 Jan 04; Vol. 45 (D1), pp. D597-D603. Date of Electronic Publication: 2016 Sep 12.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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