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Academic Journal

A Bioinformatics-Based Study on Methylation Alterations of the FBLN1 Gene in Hippocampal Tissue of Alzheimer's Disease Model DKO and DTG Mice.

  • Authors : Tang R; School of Basic Medical Sciences, Southwest Medical University, Luzhou 646000, China.; Jian Y

Subjects: Alzheimer Disease*/Alzheimer Disease*/Alzheimer Disease*/genetics ; Alzheimer Disease*/Alzheimer Disease*/Alzheimer Disease*/metabolism ; Alzheimer Disease*/Alzheimer Disease*/Alzheimer Disease*/pathology

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Aug 20; Vol. 25 (16). Date of Electronic Publication: 2024 Aug 20.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

JMnorm: a novel joint multi-feature normalization method for integrative and comparative epigenomics.

  • Authors : Xiang G; CAMP4 Therapeutics Corp., One Kendall Square, Building 1400 West, Cambridge, MA 02139, USA.; Guo Y

Subjects: Epigenomics*/Epigenomics*/Epigenomics*/methods ; Computational Biology*/Computational Biology*/Computational Biology*/methods; Epigenesis, Genetic

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 25; Vol. 52 (2), pp. e11.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Optimal transport analysis reveals trajectories in steady-state systems.

  • Authors : Zhang S; Department of Mathematics, University of British Columbia, Vancouver, Canada.; Afanassiev A

Subjects: Epigenesis, Genetic* ; Models, Biological*; Cell Physiological Phenomena/Cell Physiological Phenomena/Cell Physiological Phenomena/*physiology

  • Source: PLoS computational biology [PLoS Comput Biol] 2021 Dec 03; Vol. 17 (12), pp. e1009466. Date of Electronic Publication: 2021 Dec 03 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Detecting methylation quantitative trait loci using a methylation random field method.

  • Authors : Lyu C; Department of Epidemiology and Biostatistics, Indiana University, Bloomington, IN, USA.; Huang M

Subjects: DNA Methylation* ; Epigenesis, Genetic* ; Quantitative Trait Loci*

  • Source: Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Charting differentially methylated regions in cancer with Rocker-meth.

Subjects: DNA Methylation* ; Epigenesis, Genetic*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: Communications biology [Commun Biol] 2021 Nov 02; Vol. 4 (1), pp. 1249. Date of Electronic Publication: 2021 Nov 02.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning.

  • Authors : Xu H; Center for Precision Health, School of Biomedical Informatics.; Jia P

Subjects: Computational Biology* ; DNA Methylation* ; Deep Learning*

  • Source: Briefings in bioinformatics [Brief Bioinform] 2021 May 20; Vol. 22 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.

  • Authors : Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Brazilian Biorenewables National Laboratory-LNBR, Brazilian Center for Research in Energy and Materials-CNPEM, Campinas, SP 13083-100, Brazil.

Subjects: Databases, Genetic* ; Epigenesis, Genetic* ; Genome, Human*

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D172-D182.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy.

  • Authors : Murat K; Center for Skin Sciences, University of Bradford, Richmond Road, Bradford BD7 1DP, UK.; Grüning B

Subjects: Epigenesis, Genetic* ; Software*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: GigaScience [Gigascience] 2020 May 01; Vol. 9 (5).Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Enhanced identification of significant regulators of gene expression.

  • Authors : Ehsani R; Department of Mathematics, University of Zabol, Zabol, Iran. .; Department of Bioinformatics, University of Zabol, Zabol, Iran. .

Subjects: Epigenesis, Genetic*; Computational Biology/Computational Biology/Computational Biology/*methods ; Transcription Factors/Transcription Factors/Transcription Factors/*metabolism

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Apr 06; Vol. 21 (1), pp. 134. Date of Electronic Publication: 2020 Apr 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Extracting a biologically latent space of lung cancer epigenetics with variational autoencoders.

  • Authors : Wang Z; School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001, China.; Wang Y

Subjects: Epigenesis, Genetic*; Computational Biology/Computational Biology/Computational Biology/*methods ; Epigenomics/Epigenomics/Epigenomics/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Nov 25; Vol. 20 (Suppl 18), pp. 568. Date of Electronic Publication: 2019 Nov 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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