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Academic Journal

Chromatin looping links gene expression to the assembly of transcription factories (Review).

  • Authors : Perillo B; Institute for Experimental Endocrinology and Oncology, C.N.R., I‑80131 Naples, Italy.; Migliaccio A

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromosomes*/Chromosomes*/Chromosomes*/genetics; Protein Processing, Post-Translational

  • Source: Molecular medicine reports [Mol Med Rep] 2024 Jun; Vol. 29 (6). Date of Electronic Publication: 2024 Apr 12.Publisher: D. A. Spandidos Country of Publication: Greece NLM ID: 101475259 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness.

  • Authors : Chowdhury HMAM; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA.; Boult T

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromosomes*; DNA

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Mar 21; Vol. 25 (1), pp. 123. Date of Electronic Publication: 2024 Mar 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

An in silico procedure for generating protein-mediated chromatin interaction data and comparison of significant interaction calling methods.

  • Authors : Lou S; Interdisciplinary Ph.D. Program in Biostatistics, The Ohio State University, Columbus, OH, United States of America.; Lin S

Subjects: Chromatin* ; Chromosomes*; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

  • Source: PloS one [PLoS One] 2024 Jan 17; Vol. 19 (1), pp. e0287521. Date of Electronic Publication: 2024 Jan 17 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Transcription induces context-dependent remodeling of chromatin architecture during differentiation.

  • Authors : Chahar S; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.; Ben Zouari Y

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromosomes*/Chromosomes*/Chromosomes*/metabolism; Animals

  • Source: PLoS biology [PLoS Biol] 2023 Dec 04; Vol. 21 (12), pp. e3002424. Date of Electronic Publication: 2023 Dec 04 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Be-1DCNN: a neural network model for chromatin loop prediction based on bagging ensemble learning.

  • Authors : Wu H; College of Information Engineering, Northwest A&F University, Yangling, 712100 Shaanxi, China.; School of Software, Shandong University, Jinan, 250101 Shandong, China.

Subjects: Chromosomes* ; Chromatin*; Chromosome Mapping

  • Source: Briefings in functional genomics [Brief Funct Genomics] 2023 Nov 10; Vol. 22 (5), pp. 475-484.Publisher: Oxford University Press Country of Publication: England NLM ID: 101528229 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding.

  • Authors : Duan Z; Department of Computer Science, University of California, Irvine, 92697 CA, USA.; Xu S

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromosomes*; DNA

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jan 22; Vol. 25 (2).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

DeDoc2 Identifies and Characterizes the Hierarchy and Dynamics of Chromatin TAD-Like Domains in the Single Cells.

  • Authors : Li A; State Key Laboratory of Software Development Environment, School of Computer Science, Beihang University, Beijing, 100191, P. R. China.; Zhongguancun Laboratory, Beijing, 100094, P. R. China.

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromosomes*; Humans

  • Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2023 Jul; Vol. 10 (20), pp. e2300366. Date of Electronic Publication: 2023 May 10.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

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Academic Journal

DeCOOC Deconvoluted Hi-C Map Characterizes the Chromatin Architecture of Cells in Physiologically Distinctive Tissues.

  • Authors : Wang J; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, Beijing, 100101, China.; School of Life Science, University of Chinese Academy of Sciences, Beijing, 100049, China.

Subjects: Chromatin* ; Chromosomes*/Chromosomes*/Chromosomes*/genetics; Genomics/Genomics/Genomics/methods

  • Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2023 Sep; Vol. 10 (27), pp. e2301058. Date of Electronic Publication: 2023 Jul 28.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

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Academic Journal

iEnhance: a multi-scale spatial projection encoding network for enhancing chromatin interaction data resolution.

  • Authors : Li K; Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China.; Zhang P

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromosomes*; Genome

  • Source: Briefings in bioinformatics [Brief Bioinform] 2023 Jul 20; Vol. 24 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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