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Sequence Alignment : Methods, Models, Concepts, and Strategies

• Authors : Michael S. Rosenberg Ph. D.

Subjects: Sequence alignment (Bioinformatics); Bioinformatics; Computational biologySCIENCE / Life Sciences / Evolution

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SigAlign: an alignment algorithm guided by explicit similarity criteria.

• Authors : Bahk, Kunhyung¹ (AUTHOR); Sung, Joohon^1,2 (AUTHOR)

Subjects: *SEQUENCE alignment; *DATABASE searching; *BIOINFORMATICS

• Source: Nucleic Acids Research. 8/27/2024, Vol. 52 Issue 15, p8717-8733. 17p.

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X-Mapper: fast and accurate sequence alignment via gapped x-mers

• Authors : Jeffry M. Gaston; Eric J. Alm; An-Ni Zhang

Subjects: Bioinformatics; Sequence alignment algorithms; K-mer

• Source: Genome Biology, Vol 26, Iss 1, Pp 1-27 (2025)

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Enhanced Genetic Method for Optimizing Multiple Sequence Alignment.

• Authors : Ibrahim, Mohammed K.¹ (AUTHOR) ; Yusof, Umi Kalsom¹ (AUTHOR); Eisa, Taiseer Abdalla Elfadil² (AUTHOR)

• Source: Mathematics (2227-7390). Nov2023, Vol. 11 Issue 22, p4578. 23p.

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Mathematical Modeling in Bioinformatics: Application of an Alignment-Free Method Combined with Principal Component Analysis.

• Authors : Bielińska-Wąż, Dorota¹ (AUTHOR) ; Wąż, Piotr² (AUTHOR); Błaczkowska, Agata¹ (AUTHOR)

• Source: Symmetry (20738994). Aug2024, Vol. 16 Issue 8, p967. 20p.

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GPU Performance of Alignment Step in Next Generation Sequencing Analysis.

• Authors : Akarkamçı, Hilal¹ ; Özdoğan, Gülistan Özdemir¹

• Source: Gazi Journal of Engineering Sciences (GJES) / Gazi Mühendislik Bilimleri Dergisi. agu2024, Vol. 10 Issue 2, p432-442. 11p.

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Meta-Sezgisel Tabanlı Clustal-SA Algoritmasını Kullanarak DNA Sekanslarında Çoklu Dizi Hizalama.

• Authors : ERDİRİK, Hatice¹ ; KARCIOĞLU, Abdullah Ammar²; TANYOLAÇ, Muhammed Bahattin³

• Source: Journal of the Institute of Science & Technology / Iğdır Üniversitesi Fen Bilimleri Enstitüsü Dergisi. haz2024, Vol. 14 Issue 2, p544-562. 19p.

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G-SAIP: Graphical Sequence Alignment Through Parallel Programming in the Post-Genomic Era.

• Authors : Piña, Johan S.^1,2 ; Orozco-Arias, Simon^2,3 ; Tobón-Orozco, Nicolas²

• Source: Evolutionary Bioinformatics. Jan-Dec2023, Vol. 19, p1-10. 10p.

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Bioinformatics Goes Viral: I. Databases, Phylogenetics and Phylodynamics Tools for Boosting Virus Research.

• Authors : Vello, Federico¹ (AUTHOR) ; Filippini, Francesco¹ (AUTHOR) ; Righetto, Irene¹ (AUTHOR)

Subjects: *COMPUTATIONAL biology; *SEQUENCE alignment; *COVID-19 pandemic

• Source: Viruses (1999-4915). Sep2024, Vol. 16 Issue 9, p1425. 26p.

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Enhancing Multiple Sequence Alignment with Genetic Algorithms: A Bioinformatics Approach in Biomedical Engineering.

• Authors : Rios-Willars, Ernesto¹ ; Vélez-Segura, Jennifer²; Delabra-Salinas, María Magdalena³

• Source: Revista Mexicana de Ingeniería Biomédica. May-Aug2024, Vol. 45 Issue 2, p62-77. 16p.

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