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Academic Journal

Advancing microbial diagnostics: a universal phylogeny guided computational algorithm to find unique sequences for precise microorganism detection.

  • Authors : Sharma GK; Malaviya National Institute of Technology, Jawahar Lal Nehru Marg, Jhalana Gram, Malviya Nagar, Jaipur, Rajasthan 302017, India.; Sharma R

Subjects: Algorithms* ; Bacteria*/Bacteria*/Bacteria*/genetics ; Bacteria*/Bacteria*/Bacteria*/isolation & purification

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Sep 23; Vol. 25 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Deep learning revealed the distribution and evolution patterns for invertible promoters across bacterial lineages.

  • Authors : Wen J; Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.; Zhang H

Subjects: Promoter Regions, Genetic* ; Deep Learning* ; Bacteria*/Bacteria*/Bacteria*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Nov 27; Vol. 52 (21), pp. 12817-12830.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

PAH contamination in coastal surface sediments and associated bacterial communities.

  • Authors : Castillo-Ilabaca C; Programa de Postgrado en Oceanografía, Departamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Casilla 160-C, Concepción, Chile.; Centro de Investigación Oceanográfica COPAS Coastal, Universidad de Concepción, Concepción, Chile.

Subjects: Geologic Sediments*/Geologic Sediments*/Geologic Sediments*/microbiology ; Polycyclic Aromatic Hydrocarbons*/Polycyclic Aromatic Hydrocarbons*/Polycyclic Aromatic Hydrocarbons*/metabolism ; Polycyclic Aromatic Hydrocarbons*/Polycyclic Aromatic Hydrocarbons*/Polycyclic Aromatic Hydrocarbons*/analysis

  • Source: Scientific reports [Sci Rep] 2024 Nov 23; Vol. 14 (1), pp. 29053. Date of Electronic Publication: 2024 Nov 23.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

MosAIC: An annotated collection of mosquito-associated bacteria with high-quality genome assemblies.

Subjects: Phylogeny* ; Culicidae*/Culicidae*/Culicidae*/microbiology ; Genome, Bacterial*

  • Source: PLoS biology [PLoS Biol] 2024 Nov 15; Vol. 22 (11), pp. e3002897. Date of Electronic Publication: 2024 Nov 15 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Termites and subsocial roaches inherited many bacterial-borne carbohydrate-active enzymes (CAZymes) from their common ancestor.

  • Authors : Beránková T; Okinawa Institute of Science & Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, 904-0495, Japan.; Faculty of Tropical AgriSciences, Czech University of Life Sciences, Prague, Czech Republic.

Subjects: Isoptera*/Isoptera*/Isoptera*/microbiology ; Isoptera*/Isoptera*/Isoptera*/enzymology ; Bacteria*/Bacteria*/Bacteria*/enzymology

  • Source: Communications biology [Commun Biol] 2024 Nov 06; Vol. 7 (1), pp. 1449. Date of Electronic Publication: 2024 Nov 06.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Extreme trophic tales: deciphering bacterial diversity and potential functions in oligotrophic and hypereutrophic lakes.

  • Authors : Xie G; College of Biology and Pharmaceutical Engineering, West Anhui University, Lu'an, 237012, China.; Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China.

Subjects: Lakes*/Lakes*/Lakes*/microbiology ; Bacteria*/Bacteria*/Bacteria*/classification ; Bacteria*/Bacteria*/Bacteria*/genetics

  • Source: BMC microbiology [BMC Microbiol] 2024 Sep 14; Vol. 24 (1), pp. 348. Date of Electronic Publication: 2024 Sep 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180

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Academic Journal

Distribution and functional perspective analysis of epiphytic and endophytic bacterial communities associated with marine seaweeds, Alexandria shores, Egypt.

Subjects: Bacteria*/Bacteria*/Bacteria*/classification ; Bacteria*/Bacteria*/Bacteria*/isolation & purification ; Bacteria*/Bacteria*/Bacteria*/genetics

  • Source: BMC microbiology [BMC Microbiol] 2024 Aug 06; Vol. 24 (1), pp. 293. Date of Electronic Publication: 2024 Aug 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180

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Academic Journal

Microbial carbohydrate active enzyme (CAZyme) genes and diversity from Menagesha Suba natural forest soils of Ethiopia as revealed by shotgun metagenomic sequencing.

  • Authors : Sime AM; Biotechnology Department, College of Natural and Applied Sciences, Addis Ababa Sciences and Technology University, Addis Ababa, Ethiopia.; Kifle BA

Subjects: Soil Microbiology* ; Metagenomics*/Metagenomics*/Metagenomics*/methods ; Forests*

  • Source: BMC microbiology [BMC Microbiol] 2024 Aug 01; Vol. 24 (1), pp. 285. Date of Electronic Publication: 2024 Aug 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180

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Academic Journal

Frequent Acquisition of Glycoside Hydrolase Family 32 (GH32) Genes from Bacteria via Horizontal Gene Transfer Drives Adaptation of Invertebrates to Diverse Sources of Food and Living Habitats.

  • Authors : Cheng X; Department of Entomology, 123 Waters Hall, Kansas State University, Manhattan, KS 66506, USA.; Liu X

Subjects: Gene Transfer, Horizontal* ; Glycoside Hydrolases*/Glycoside Hydrolases*/Glycoside Hydrolases*/genetics ; Glycoside Hydrolases*/Glycoside Hydrolases*/Glycoside Hydrolases*/metabolism

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Jul 30; Vol. 25 (15). Date of Electronic Publication: 2024 Jul 30.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Adolescent gut microbiome imbalance and its association with immune response in inflammatory bowel diseases and obesity.

  • Authors : Joo M; Department of Health Sciences and Technology, Gachon Advanced Institute for Health Sciences and Technology (GAIHST), Gachon University, Incheon, 21999, Korea.; Nam S

Subjects: Gastrointestinal Microbiome*/Gastrointestinal Microbiome*/Gastrointestinal Microbiome*/genetics ; RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/RNA, Ribosomal, 16S*/genetics ; Obesity*/Obesity*/Obesity*/microbiology Prevotella copri

  • Source: BMC microbiology [BMC Microbiol] 2024 Jul 19; Vol. 24 (1), pp. 268. Date of Electronic Publication: 2024 Jul 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180

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