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BindVAE: Dirichlet variational autoencoders for de novo motif discovery from accessible chromatin

• Authors : Kshirsagar, Meghana; Yuan, Han; Ferres, Juan Lavista ...

• Source: Genome Biology ; volume 23, issue 1 ; ISSN 1474-760X

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SHAPE-guided RNA structure homology search and motif discovery

• Authors : Morandi, Edoardo; van Hemert, Martijn J.; Incarnato, Danny

• Source: Nature Communications ; volume 13, issue 1 ; ISSN 2041-1723

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Accelerating time series motif discovery in the Intel Xeon Phi KNL processor

• Authors : Oscar Plata; Iván López Fernández; Eladio Gutierrez

Subjects: 020203 distributed computing; Hardware and Architecture; Computer science

• Source: The Journal of Supercomputing. 75:7053-7075

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Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)

• Authors : Asgari, Ehsaneddin; McHardy, Alice C.; Mofrad, Mohammad R. K.

• Source: Scientific Reports ; volume 9, issue 1 ; ISSN 2045-2322

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High performance computing approach for DNA motif discovery

• Authors : Shrimankar, Deepti D.; Ministry of Electronics and Information technology

• Source: CSI Transactions on ICT ; volume 7, issue 4, page 295-297 ; ISSN 2277-9078 2277-9086

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MD-SVM: a novel SVM-based algorithm for the motif discovery of transcription factor binding sites

• Authors : Hu, Jialu; Wang, Jingru; Lin, Jianan

• Source: BMC Bioinformatics ; volume 20, issue S7 ; ISSN 1471-2105

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Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

• Authors : Khakzad, Hamed; Malmström, Johan; Malmström, Lars

• Source: BMC Bioinformatics ; volume 20, issue S4 ; ISSN 1471-2105

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WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data

• Authors : Zhang, Hongbo; Zhu, Lin; Huang, De-Shuang

• Source: Scientific Reports ; volume 7, issue 1 ; ISSN 2045-2322

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A systematic approach to RNA-associated motif discovery

• Authors : Gao, Tian; Shu, Jiang; Cui, Juan ...

• Source: BMC Genomics ; volume 19, issue 1 ; ISSN 1471-2164

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DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

• Authors : Saad, Chadi; Noé, Laurent; Richard, Hugues ...

• Source: BMC Bioinformatics ; volume 19, issue 1 ; ISSN 1471-2105

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