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AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data.

• Authors : Alsamman, Alsamman M.¹ (AUTHOR); El Allali, Achraf² (AUTHOR) ; Mokhtar, Morad M.^1,2 (AUTHOR)

Subjects: *SEQUENCE alignment; *POPULATION genetics; *GENETIC variation

• Source: PLoS ONE. 9/20/2023, Vol. 18 Issue 9, p1-11. 11p.

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TIPP3 and TIPP3-fast: Improved abundance profiling in metagenomics.

• Authors : Shen, Chengze¹ (AUTHOR); Wedell, Eleanor¹ (AUTHOR); Pop, Mihai² (AUTHOR)

• Source: PLoS Computational Biology. 4/4/2025, Vol. 21 Issue 4, p1-21. 21p.

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Polymorphisms in Pfkelch13 domains before and after the introduction of artemisinin-based combination therapy in Southwest Nigeria.

• Authors : Amusan, Abiodun^1,2,3 (AUTHOR); Akinola, Olugbenga^1,2 (AUTHOR); Akano, Kazeem⁴ (AUTHOR)

Subjects: *GENETIC variation; *ARTEMISININ; *SEQUENCE alignment

• Source: PLoS ONE. 3/31/2025, Vol. 20 Issue 3, p1-14. 14p.

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HELIOS: High-speed sequence alignment in optics.

• Authors : Maleki, Ehsan¹ (AUTHOR); Akbari Rokn Abadi, Saeedeh¹ (AUTHOR); Koohi, Somayyeh¹ (AUTHOR)

• Source: PLoS Computational Biology. 11/21/2022, Vol. 18 Issue 11, p1-41. 41p. 2 Color Photographs, 4 Diagrams, 19 Charts, 3 Graphs.

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The impact of software and criteria on the selection of best-fit nucleotide substitution models for molecular evolutionary genetic analysis.

• Authors : Li, Xingguang^1,2 (AUTHOR) ; Sunday Okoh, Olayinka³ (AUTHOR); Sequeira Trovão, Nídia⁴ (AUTHOR)

Subjects: *NUCLEOTIDE sequencing; *SEQUENCE alignment; *RESEARCH personnel

• Source: PLoS ONE. 3/26/2025, Vol. 20 Issue 3, p1-16. 16p.

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Recursive MAGUS: Scalable and accurate multiple sequence alignment.

• Authors : Smirnov, Vladimir¹ (AUTHOR)

• Source: PLoS Computational Biology. 10/6/2021, Vol. 17 Issue 10, p1-17. 17p. 2 Charts, 10 Graphs.

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Gene sequence analysis model construction based on k-mer statistics.

• Authors : Gao, Dongjie¹ (AUTHOR)

Subjects: *SEQUENCE alignment; *SEQUENCE analysis; *STATISTICAL power analysis

• Source: PLoS ONE. 9/12/2024, Vol. 19 Issue 9, p1-19. 19p.

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Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment.

• Authors : Maarala, Altti Ilari¹ (AUTHOR) ; Arasalo, Ossi² (AUTHOR); Valenzuela, Daniel¹ (AUTHOR)

Subjects: *GENETIC variation; *SEQUENCE alignment; *DATA compression

• Source: PLoS ONE. 8/3/2021, Vol. 16 Issue 8, p1-19. 19p.

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Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction.

• Authors : Gamermann, Daniel¹; Montagud, Arnau^2,3; Conejero, J. Alberto⁴

Subjects: *SEQUENCE alignment; *MOLECULAR biology; *PHYSICAL sciences

• Source: PLoS ONE. 9/5/2019, Vol. 14 Issue 9, p1-13. 13p.

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ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference.

• Authors : Steenwyk, Jacob L.¹ (AUTHOR) ; Buida III, Thomas J.² (AUTHOR); Li, Yuanning¹ (AUTHOR)

• Source: PLoS Biology. 12/2/2020, Vol. 18 Issue 12, p1-17. 17p. 1 Chart, 2 Graphs.

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