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AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data.

• Authors : Alsamman, Alsamman M.¹ (AUTHOR); El Allali, Achraf² (AUTHOR) ; Mokhtar, Morad M.^1,2 (AUTHOR)

Subjects: *SEQUENCE alignment; *POPULATION genetics; *GENETIC variation

• Source: PLoS ONE. 9/20/2023, Vol. 18 Issue 9, p1-11. 11p.

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HELIOS: High-speed sequence alignment in optics.

• Authors : Maleki, Ehsan¹ (AUTHOR); Akbari Rokn Abadi, Saeedeh¹ (AUTHOR); Koohi, Somayyeh¹ (AUTHOR)

• Source: PLoS Computational Biology. 11/21/2022, Vol. 18 Issue 11, p1-41. 41p. 2 Color Photographs, 4 Diagrams, 19 Charts, 3 Graphs.

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Gene sequence analysis model construction based on k-mer statistics.

• Authors : Gao, Dongjie¹ (AUTHOR)

Subjects: *SEQUENCE alignment; *SEQUENCE analysis; *STATISTICAL power analysis

• Source: PLoS ONE. 9/12/2024, Vol. 19 Issue 9, p1-19. 19p.

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Recursive MAGUS: Scalable and accurate multiple sequence alignment.

• Authors : Smirnov, Vladimir¹ (AUTHOR)

• Source: PLoS Computational Biology. 10/6/2021, Vol. 17 Issue 10, p1-17. 17p. 2 Charts, 10 Graphs.

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Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment.

• Authors : Maarala, Altti Ilari¹ (AUTHOR) ; Arasalo, Ossi² (AUTHOR); Valenzuela, Daniel¹ (AUTHOR)

Subjects: *GENETIC variation; *SEQUENCE alignment; *DATA compression

• Source: PLoS ONE. 8/3/2021, Vol. 16 Issue 8, p1-19. 19p.

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TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments.

• Authors : Zhai, Yixiao^1,2,3 (AUTHOR); Chao, Jiannan^1,3 (AUTHOR); Wang, Yizheng^1,3 (AUTHOR)

• Source: PLoS Computational Biology. 4/1/2024, Vol. 20 Issue 4, p1-22. 22p.

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Unveiling hidden structural patterns in the SARS-CoV-2 genome: Computational insights and comparative analysis.

• Authors : Ziesel, Alison¹ (AUTHOR) ; Jabbari, Hosna¹ (AUTHOR)

Subjects: *SARS-CoV-2; *VIRAL genomes; *NON-coding RNA

• Source: PLoS ONE. 4/4/2024, Vol. 19 Issue 4, p1-22. 22p.

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Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction.

• Authors : Gamermann, Daniel¹; Montagud, Arnau^2,3; Conejero, J. Alberto⁴

Subjects: *SEQUENCE alignment; *MOLECULAR biology; *PHYSICAL sciences

• Source: PLoS ONE. 9/5/2019, Vol. 14 Issue 9, p1-13. 13p.

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Impact of phylogeny on the inference of functional sectors from protein sequence data.

• Authors : Dietler N; Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Subjects: Phylogeny* ; Proteins*/Proteins*/Proteins*/genetics ; Proteins*/Proteins*/Proteins*/chemistry

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Sep 23; Vol. 20 (9), pp. e1012091. Date of Electronic Publication: 2024 Sep 23 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection

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pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment.

• Authors : Warris, Sven^1,2 ; Timal, N. Roshan N.³; Kempenaar, Marcel¹

Subjects: *PYTHON programming language; *SEQUENCE alignment; *ALGORITHMS

• Source: PLoS ONE. 1/2/2018, Vol. 13 Issue 1, p1-9. 9p.

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