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  • 1-10 ل  854 نتائج ل ""Databases, Protein""
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Academic Journal

iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks.

  • Authors : Huang R; School of Information Engineering, Jingdezhen Ceramic University, Jingdezhen Jiangxi, China.; Qiu W

Subjects: Neural Networks, Computer* ; DNA*/DNA*/DNA*/metabolism ; DNA*/DNA*/DNA*/chemistry

  • Source: PloS one [PLoS One] 2025 May 13; Vol. 20 (5), pp. e0320817. Date of Electronic Publication: 2025 May 13 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

IgStrand: A universal residue numbering scheme for the immunoglobulin-fold (Ig-fold) to study Ig-proteomes and Ig-interactomes.

  • Authors : Tawfeeq C; Department of Chemistry and Biochemistry, California State University Northridge, Northridge, California, United States of America.; Wang J

Subjects: Proteome*/Proteome*/Proteome*/chemistry ; Proteome*/Proteome*/Proteome*/metabolism ; Proteome*/Proteome*/Proteome*/genetics

  • Source: PLoS computational biology [PLoS Comput Biol] 2025 Apr 14; Vol. 21 (4), pp. e1012813. Date of Electronic Publication: 2025 Apr 14 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection

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Academic Journal

PUNCH2: Explore the strategy for intrinsically disordered protein predictor.

  • Authors : Meng D; School of Computer Science, University College Dublin, Dublin, Ireland.; Pollastri G

Subjects: Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/chemistry ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Software*

  • Source: PloS one [PLoS One] 2025 Mar 26; Vol. 20 (3), pp. e0319208. Date of Electronic Publication: 2025 Mar 26 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Navigating the unstructured by evaluating alphafold's efficacy in predicting missing residues and structural disorder in proteins.

  • Authors : Zheng S; Bio-Electron Microscopy Facility, iHuman Institution, ShanghaiTech University, Shanghai, China.

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/chemistry; Databases, Protein

  • Source: PloS one [PLoS One] 2025 Mar 25; Vol. 20 (3), pp. e0313812. Date of Electronic Publication: 2025 Mar 25 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Benchmarking uncertainty quantification for protein engineering.

  • Authors : Greenman KP; Department of Chemical Engineering, Catholic Institute of Technology, Cambridge, Massachusetts, United States of America.; Department of Chemistry, Catholic Institute of Technology, Cambridge, Massachusetts, United States of America.

Subjects: Benchmarking*/Benchmarking*/Benchmarking*/methods ; Protein Engineering*/Protein Engineering*/Protein Engineering*/methods ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: PLoS computational biology [PLoS Comput Biol] 2025 Jan 07; Vol. 21 (1), pp. e1012639. Date of Electronic Publication: 2025 Jan 07 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection

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Academic Journal

A resource for improved predictions of Trypanosoma and Leishmania protein three-dimensional structure.

  • Authors : Wheeler RJ; Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, United Kingdom.

Subjects: Leishmania* ; Databases, Protein* ; Protozoan Proteins*/Protozoan Proteins*/Protozoan Proteins*/chemistry

  • Source: PloS one [PLoS One] 2021 Nov 11; Vol. 16 (11), pp. e0259871. Date of Electronic Publication: 2021 Nov 11 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Mining the Protein Data Bank to improve prediction of changes in protein-protein binding.

  • Authors : Flores SC; Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden.; Alexiou A

Subjects: Data Mining* ; Databases, Protein*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: PloS one [PLoS One] 2021 Nov 02; Vol. 16 (11), pp. e0257614. Date of Electronic Publication: 2021 Nov 02 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family.

  • Authors : Kourelis J; The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom.; Sakai T

Subjects: Databases, Protein*; Disease Resistance/Disease Resistance/Disease Resistance/*immunology ; NLR Proteins/NLR Proteins/NLR Proteins/*metabolism

  • Source: PLoS biology [PLoS Biol] 2021 Oct 20; Vol. 19 (10), pp. e3001124. Date of Electronic Publication: 2021 Oct 20 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection

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Academic Journal

The influence of dataset homology and a rigorous evaluation strategy on protein secondary structure prediction.

  • Authors : Chen TR; Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, Taiwan.; Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.

Subjects: Algorithms* ; Protein Structure, Secondary* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: PloS one [PLoS One] 2021 Jul 14; Vol. 16 (7), pp. e0254555. Date of Electronic Publication: 2021 Jul 14 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences.

  • Authors : Faezov B; Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russian Federation.; Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States of America.

Subjects: Amino Acid Sequence* ; Databases, Protein*; Animals

  • Source: PloS one [PLoS One] 2021 Jul 06; Vol. 16 (7), pp. e0253411. Date of Electronic Publication: 2021 Jul 06 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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  • 1-10 ل  854 نتائج ل ""Databases, Protein""