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Academic Journal

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design.

  • Authors : Tao XB; Department of Chemistry, University of California, Berkeley, CA 94720, USA.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Subjects: Peptide Synthases*/Peptide Synthases*/Peptide Synthases*/biosynthesis ; Peptide Synthases*/Peptide Synthases*/Peptide Synthases*/chemistry ; Peptide Synthases*/Peptide Synthases*/Peptide Synthases*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D532-D538.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Docking domain-mediated subunit interactions in natural product megasynth(et)ases.

  • Authors : Smith HG; Warwick Medical School, University of Warwick, Coventry CV4 7AL, UK.; Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK.

Subjects: Biological Products/Biological Products/Biological Products/*chemistry ; Peptide Synthases/Peptide Synthases/Peptide Synthases/*chemistry ; Polyketide Synthases/Polyketide Synthases/Polyketide Synthases/*chemistry

  • Source: Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2021 Jun 04; Vol. 48 (3-4).Publisher: Oxford University Press Country of Publication: Germany NLM ID: 9705544 Publication Model: Print Cited Medium:

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Academic Journal

Two distinct non-ribosomal peptide synthetase-independent siderophore synthetase gene clusters identified in Armillaria and other species in the Physalacriaceae.

  • Authors : Narh Mensah DL; Departments of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria 0002, South Africa.; CSIR-Food Research Institute, Microbiology and Mushroom Research Division, P. O. Box, M20, Accra, Ghana.

Subjects: Siderophores*/Siderophores*/Siderophores*/chemistry ; Siderophores*/Siderophores*/Siderophores*/metabolism ; Armillaria*/Armillaria*/Armillaria*/genetics

  • Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 06; Vol. 13 (12).Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium:

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Academic Journal

Inactivation of folylpolyglutamate synthetase Met7 results in genome instability driven by an increased dUTP/dTTP ratio.

  • Authors : Schmidt TT; DNA Repair Mechanisms and Cancer, German Cancer Research Center (DKFZ), Heidelberg D-69120, Germany.; Faculty of Bioscience, Heidelberg University, Heidelberg D-69120, Germany.

Subjects: Genome, Fungal*; Deoxyuracil Nucleotides/Deoxyuracil Nucleotides/Deoxyuracil Nucleotides/*metabolism ; Folic Acid/Folic Acid/Folic Acid/*metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 10; Vol. 48 (1), pp. 264-277.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast.

  • Authors : Agmon N; Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, NY, USA.; Temple J

Subjects: Adenine/Adenine/Adenine/*biosynthesis ; Biosynthetic Pathways/Biosynthetic Pathways/Biosynthetic Pathways/*genetics ; Carboxy-Lyases/Carboxy-Lyases/Carboxy-Lyases/*genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 10; Vol. 48 (1), pp. 486-499.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Structural basis of the nonribosomal codes for nonproteinogenic amino acid selective adenylation enzymes in the biosynthesis of natural products.

  • Authors : Kudo F; Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan. .; Miyanaga A

Subjects: Amino Acids/Amino Acids/Amino Acids/*chemistry ; Biological Products/Biological Products/Biological Products/*chemistry ; Peptide Synthases/Peptide Synthases/Peptide Synthases/*genetics

  • Source: Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2019 Mar; Vol. 46 (3-4), pp. 515-536. Date of Electronic Publication: 2018 Oct 05.Publisher: Oxford University Press Country of Publication: Germany NLM ID: 9705544 Publication Model: Print-Electronic Cited

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Academic Journal

SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases.

  • Authors : Khater S; National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India.; Gupta M

Subjects: Software*; Peptide Synthases/Peptide Synthases/Peptide Synthases/*chemistry ; Polyketide Synthases/Polyketide Synthases/Polyketide Synthases/*chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2017 Jul 03; Vol. 45 (W1), pp. W72-W79.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing.

  • Authors : Baranašić D; Faculty of Food Technology and Biotechnology, University of Zagreb, Pierottijeva 6, 10000, Zagreb, Croatia.; Zucko J

Subjects: Peptide Synthases/Peptide Synthases/Peptide Synthases/*chemistry ; Peptide Synthases/Peptide Synthases/Peptide Synthases/*metabolism ; Sequence Analysis, Protein/Sequence Analysis, Protein/Sequence Analysis, Protein/*methods

  • Source: Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2014 Feb; Vol. 41 (2), pp. 461-7. Date of Electronic Publication: 2013 Oct 09.Publisher: Oxford University Press Country of Publication: Germany NLM ID: 9705544 Publication Model: Print-Electronic Cited

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Academic Journal

Specificity determinants for the two tRNA substrates of the cyclodipeptide synthase AlbC from Streptomyces noursei.

  • Authors : Moutiez M; Service d'Ingénierie Moléculaire des Protéines, iBiTec-S, Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), 91191 Gif-sur-Yvette Cedex, France .; Seguin J

Subjects: Bacterial Proteins/Bacterial Proteins/Bacterial Proteins/*metabolism ; Peptide Synthases/Peptide Synthases/Peptide Synthases/*metabolism ; RNA, Transfer, Amino Acyl/RNA, Transfer, Amino Acyl/RNA, Transfer, Amino Acyl/*metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2014 Jun; Vol. 42 (11), pp. 7247-58. Date of Electronic Publication: 2014 Apr 29.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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Academic Journal

MbtH homology codes to identify gifted microbes for genome mining.

  • Authors : Baltz RH; CognoGen Biotechnology Consulting, 7636 Andora Drive, Sarasota, FL, 34238, USA, .

Subjects: Genome, Microbial* ; Sequence Homology, Nucleic Acid*; Actinobacteria/Actinobacteria/Actinobacteria/*genetics

  • Source: Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2014 Feb; Vol. 41 (2), pp. 357-69. Date of Electronic Publication: 2013 Nov 07.Publisher: Oxford University Press Country of Publication: Germany NLM ID: 9705544 Publication Model: Print-Electronic Cited

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