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Academic Journal

Copy number and sequence variation in rDNA of Daphnia pulex from natural populations: insights from whole-genome sequencing.

  • Authors : Elguweidi A; Department of Integrative Biology, University of Guelph, Guelph, ON, N1G2W1, Canada.; Crease T

Subjects: Daphnia*/Daphnia*/Daphnia*/genetics ; DNA Copy Number Variations* ; DNA, Ribosomal*/DNA, Ribosomal*/DNA, Ribosomal*/genetics

  • Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Jul 08; Vol. 14 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium:

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Academic Journal

HMZDupFinder: a robust computational approach for detecting intragenic homozygous duplications from exome sequencing data.

  • Authors : Du H; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Dardas Z

Subjects: DNA Copy Number Variations* ; Exome Sequencing* ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Feb 28; Vol. 52 (4), pp. e18.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Recent reactivation of a pathogenicity-associated transposable element is associated with major chromosomal rearrangements in a fungal wheat pathogen.

  • Authors : Badet T; Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, CH-2000 Neuchâtel, Switzerland.; Tralamazza SM

Subjects: DNA Copy Number Variations* ; DNA Transposable Elements* ; Ascomycota*/Ascomycota*/Ascomycota*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Feb 09; Vol. 52 (3), pp. 1226-1242.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

rcCAE: a convolutional autoencoder method for detecting intra-tumor heterogeneity and single-cell copy number alterations.

  • Authors : Yu Z; School of Information Engineering, Ningxia University, 750021, Ningxia, China.; Collaborative Innovation Center for Ningxia Big Data and Artificial Intelligence Co-founded by Ningxia Municipality and Ministry of Education, Ningxia University, 750021, Ningxia, China.

Subjects: DNA Copy Number Variations* ; Neoplasms*/Neoplasms*/Neoplasms*/genetics; Humans

  • Source: Briefings in bioinformatics [Brief Bioinform] 2023 May 19; Vol. 24 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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Academic Journal

Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans.

  • Authors : Morton EA; Department of Biology, SUNY Brockport, Brockport, NY 14420, USA.; Hall AN

Subjects: Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/genetics ; DNA Copy Number Variations*; Animals

  • Source: Genetics [Genetics] 2023 May 04; Vol. 224 (1).Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited

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Academic Journal

Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection.

  • Authors : Yu S; State Key Laboratory of Animal Nutrition; Key Laboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture and Rural Affairs

Subjects: Ducks*/Ducks*/Ducks*/genetics ; DNA Copy Number Variations*; Female

  • Source: GigaScience [Gigascience] 2023 Mar 20; Vol. 12. Date of Electronic Publication: 2023 Mar 27.Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print-Electronic

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Academic Journal

The repertoire of copy number alteration signatures in human cancer.

  • Authors : Tao Z; School of Life Science and Technology, ShanghaiTech University, Shanghai 201203, China.; Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, China.

Subjects: DNA Copy Number Variations* ; Neoplasms*/Neoplasms*/Neoplasms*/genetics; Humans

  • Source: Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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Academic Journal

BMI-CNV: a Bayesian framework for multiple genotyping platforms detection of copy number variants.

  • Authors : Luo X; Department of Epidemiology and Biostatistics, Arnold School of Public Health, University of South Carolina, Columbia, SC 29208, USA.; Cai G

Subjects: DNA Copy Number Variations*; Genotype ; Bayes Theorem

  • Source: Genetics [Genetics] 2022 Nov 30; Vol. 222 (4).Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited

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Academic Journal

Accurate in silico confirmation of rare copy number variant calls from exome sequencing data using transfer learning.

  • Authors : Tan R; Department of Systems Biology, Columbia University, New York, NY 10032, USA.; Shen Y

Subjects: Exome*/Exome*/Exome*/genetics ; DNA Copy Number Variations*; Humans

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Nov 28; Vol. 50 (21), pp. e123.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

PEcnv: accurate and efficient detection of copy number variations of various lengths.

  • Authors : Wang X; Department of Computer Science and Technology, School of Electronics and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China.; Institute of Data Science and Information Quality, Shaanxi Engineering Research Center of Medical and Health Big Data, Xi'an Jiaotong University, Xi'an 710049, China.

Subjects: DNA Copy Number Variations* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Algorithms

  • Source: Briefings in bioinformatics [Brief Bioinform] 2022 Sep 20; Vol. 23 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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